Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020 15-01-15] 3,926 sequences; 380,104,241 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq394 118 8e-22 seq180 113 3e-20 seq343 109 4e-19 seq25 95.1 9e-15 >seq394 Length=301216 Score = 118 bits (130), Expect = 8e-22 Identities = 159/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || ||||||||||| ||||| || ||||| ||||| || || || | | || Sbjct 217029 AGACGTAACACCAAATGGAGCGTAGATTCCTTTTGGATATTATAGTCTGACAAGGTGCGG 217088 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| ||||||||||||||| || | ||||||||||| | |||| ||| || Sbjct 217089 CCATCTTCCAGCTGCTTACCGGCAAAAATTAAGCGCTGTTGATCTGGAGGAATGCCTTCT 217148 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAAC-CCACAGACTCTGACGCCTCCACCTCCACCGT 48727 ||||| ||| ||||| |||| | | | | || || || | || || || | || Sbjct 217149 TTGTCTTGAAT-TTTTGCTTTAACGTTCTCAATAGTATCCGAGGGTTCTACTTCTAAAGT 217207 Query 48728 AATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || ||||||||||||||||| |||||||| Sbjct 217208 GATGGTTTTACCTGTCAAAGTTTTTACAAAGATCTGCAT 217246 >seq180 Length=539930 Score = 113 bits (124), Expect = 3e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 48552 CGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCG 48611 |||||||| | ||||| ||| |||||||||||||| ||||| || | | ||| | Sbjct 121388 CGCAACACAAGATGTAATGTGGATTCTTTTTGAATATTATAATCGGACAATGTGCGACCA 121447 Query 48612 TCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTG 48671 || ||||| ||||| || || || |||| ||| || || || | |||| ||||| ||| Sbjct 121448 TCTTCCAATTGCTTTCCAGCGAAAATCAATCGTTGCTGGTCGGGTGGAATTCCCTCTTTG 121507 Query 48672 TCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATC 48731 || |||||| ||||||| | | || || || | || ||||| | || || Sbjct 121508 TCCTGAATCTTGGCTTTTACATTTTCGATAGTGTCCGAGGGTTCGACCTCAAGAGTGATG 121567 Query 48732 GTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || ||||| | |||||||||||||||||||| Sbjct 121568 GTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCAT 121602 >seq343 Length=430003 Score = 109 bits (120), Expect = 4e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||| |||||||||| ||| ||||| || || ||||||||||| | | || Sbjct 48402 AGACGCAATACCAAATGTAATGTGGATTCTTTCTGTATGTTGTAATCAGACAACGTGCGG 48461 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| |||||||| || || ||||| |||| |||||||| || | |||| || ||| Sbjct 48462 CCGTCTTCCAACTGTTTTCCAGCAAAGATCAAACGCTGTTGGTCTGGAGGAATACCTTCC 48521 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| || ||| ||| || | | || || |||| || || |||| || Sbjct 48522 TTGTCTTGGATTTTTGCTTTAACGTTTTCGATAGTATCCGACGATTCTACTTCCAAAGTG 48581 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || |||||||| || ||||| || ||||| Sbjct 48582 ATGGTTTTACCGGTCAAAGTCTTAACAAATATTTGCAT 48619 >seq25 Length=1279626 Score = 95.1 bits (104), Expect = 9e-15 Identities = 132/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 9067 GGATAAAAGATTTGTTCACAAATTAATTGAGCAATCCTGTCCCCCTTATTCACGACAAAG 9126 ||||| || || | || ||||| ||||| ||||| | ||| || || | |||| Sbjct 1223726 GGATAGAATATACGCTCGCAAATCAATTGGGCAATGCGGTCGCCACGCTTAATATCAAAA 1223785 Query 9127 TCTGTGTCGGAATGATTGAACAGCACCACTCCCACGTTACCCCTGTAATCCTCATCGATC 9186 || |||||||||||||| || || || |||| || || | |||||| ||||| ||| Sbjct 1223786 TCAACATCGGAATGATTGAAAAGAACAACACCCAAATTGCCTCGGTAATCTTCATCAATC 1223845 Query 9187 ACACCAGCACCCACGTCGATGAAGTGCTTGACCGCTAGTCCAGAGCGGGGCGCGATTCGA 9246 |||||||| ||||| |||||||| | ||| || | || || || || || | ||| Sbjct 1223846 ACACCAGCTCCCACATCGATGAAATTCTTCCAAGCCAAGCCGGATCGTGGTGCTACGCGA 1223905 Query 9247 CCGTA 9251 ||||| Sbjct 1223906 CCGTA 1223910 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380919372850098