Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020 15-01-15] 3,926 sequences; 380,104,241 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq110 91.5 1e-13 seq394 87.8 2e-12 seq343 82.4 6e-11 >seq110 Length=875010 Score = 91.5 bits (100), Expect = 1e-13 Identities = 163/238 (68%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 28549 TAAAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAAC 28608 ||||||||||||| ||||| ||||| | || || ||||| ||||| ||| || | Sbjct 86200 TAAAAATGCAAATTTTTGTTAAAACTCTTACTGGCAAAACTATTACTTTGGAAGTTGAGC 86259 Query 28609 CTTCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAG 28668 |||| || || | | || ||||| ||||| || ||||| || | || || Sbjct 86260 CTTCCGACACTATTGAAAATGTCAAGGCCAAAATTCAGGATAAAGAAGGCATTCCTCCAG 86319 Query 28669 ATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATT 28728 ||||||| | | || || || || ||||||||||||||| ||| | | |||| Sbjct 86320 ATCAACAACGTTTGATTTTCGCTGGTAAACAATTGGAAGATGGGCGGACTTTATCGGATT 86379 Query 28729 ATAACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGATAAT 28786 ||||||| ||||| || || || ||||| ||||| | | | || || || ||||| Sbjct 86380 ATAACATACAAAAGGAGTCGACCTTGCACTTGGTACTTCGTCTCCGTGGTGGTATAAT 86437 >seq394 Length=301216 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||||||||| || || ||||||||||| || ||| ||||| || Sbjct 217246 ATGCAGATCTTTGTAAAAACTTTGACAGGTAAAACCATCACTTTAGAAGTAGAACCCTCG 217187 Query 28614 GAGACGGTGGCCGATC--TCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATC 28671 || || | | || | | ||||||||| || |||||||| || | || ||||| Sbjct 217186 GATACTATTG-AGAACGTTAAAGCAAAAATTC-AAGACAAAGAAGGCATTCCTCCAGATC 217129 Query 28672 AACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATA 28731 ||||| | | || ||||| || || || |||||||| || || | || |||| Sbjct 217128 AACAGCGCTTAATTTTTGCCGGTAAGCAGCTGGAAGATGGCCGCACCTTGTCAGACTATA 217069 Query 28732 ACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780 | || ||||| |||||||| || || |||| ||| | | || ||||| Sbjct 217068 ATATCCAAAAGGAATCTACGCTCCATTTGGTGTTACGTCTTCGCGGAGG 217020 >seq343 Length=430003 Score = 82.4 bits (90), Expect = 6e-11 Identities = 98/132 (74%), Gaps = 1/132 (1%) Strand=Plus/Minus Query 28632 AAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCG 28691 ||||||||| || ||||| || || | || |||||||||| | | || || || Sbjct 45834 AAGCAAAAA-TCCAAGACAAGGAAGGTATTCCTCCAGATCAACAGCGTTTAATTTTCGCT 45776 Query 28692 GGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACT 28751 |||||||||||||||||| || || | ||||| ||||| ||||| ||||||||| Sbjct 45775 GGCAAACAATTGGAAGATGGCCGCACATTGTCTGATTACAACATACAAAAGGAATCTACT 45716 Query 28752 CTGCACATGGTA 28763 || ||| ||||| Sbjct 45715 CTTCACTTGGTA 45704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425384445177954