Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020 15-01-15] 3,926 sequences; 380,104,241 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq197 120 2e-22 seq961 100 1e-16 seq362 100 1e-16 >seq197 Length=390979 Score = 120 bits (132), Expect = 2e-22 Identities = 156/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 25922 TCAACTTTCTCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTC 25981 || ||| | | ||| ||||||||||| ||||||| ||| |||||||||| | || | Sbjct 298028 TCCACTCTTTTCATGAATAAATCTGGTATCCACAGAGCAAAAAATAAATCCCGTGCACGA 297969 Query 25982 ATTTCTTCTTTTCCGTGATTCTTTTTTAGATCTAAGAAA-TCAAAAATATCTGAGTGCCA 26040 ||| ||||| || ||||||||| | || |||||| || |||||||||| |||||| Sbjct 297968 TCTTCCTCTTTGCCCGTATTCTTTTTCAAGTC-AAGAAATTCGAAAATATCTGCGTGCCA 297910 Query 26041 TGGTTCTAAATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCT 26100 |||||||| |||||||||| |||| | | || || ||| |||||| ||| || | Sbjct 297909 AGGTTCTAAGTAGATAGCAAGTGCACCTCTACGTTGTCTGCCATCTTGATGTACATAACA 297850 Query 26101 TGCAGTTTCATTGAAAACTTTCAACATTGGAAC 26133 ||| | ||||| || |||||| ||||| Sbjct 297849 GGCAAGATTGTTGAAGACGCGCAACATAGGAAC 297817 >seq961 Length=34630 Score = 100 bits (110), Expect = 1e-16 Identities = 152/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 25921 CTCAACTTTCTCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCT 25980 ||| ||| | | ||| || | ||| || ||||||| |||||||||||||| | || | Sbjct 4480 CTCTACTCTTTTCATGAAAAGATCCGGTATCCACAGAGCATAAAATAAATCCCGTGCACG 4539 Query 25981 CATTTCTTCTTTTCCGTGATTCTTTTTTAGATCTAAGAAA-TCAAAAATATCTGAGTGCC 26039 ||||||||| || ||||||||| | || | ||||| || || ||||||| |||| Sbjct 4540 ATCTTCTTCTTTACCCGTATTCTTTTTCAAAT-TGAGAAATTCGAATATATCTGCATGCC 4598 Query 26040 ATGGTTCTAAATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATC 26099 | || ||||| || ||||||||| || | |||||| |||||||| || || || | Sbjct 4599 AAGGCTCTAAGTATATAGCAAAAGCCCCCGGACGTTTTCCACCACCTTGGTCGACATAAC 4658 Query 26100 TTGCAGTTTCATTGAAAACTTTCAACATTGGAAC 26133 ||| | ||||| | |||||| ||||| Sbjct 4659 GGGCAACATTGTTGAACAGACGCAACATAGGAAC 4692 >seq362 Length=381446 Score = 100 bits (110), Expect = 1e-16 Identities = 152/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 25921 CTCAACTTTCTCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCT 25980 ||| ||| | | ||| || | ||| || ||||||| |||||||||||||| | || | Sbjct 8254 CTCTACTCTTTTCATGAAAAGATCCGGTATCCACAGAGCATAAAATAAATCCCGTGCACG 8195 Query 25981 CATTTCTTCTTTTCCGTGATTCTTTTTTAGATCTAAGAAA-TCAAAAATATCTGAGTGCC 26039 ||||||||| || ||||||||| | || | ||||| || || ||||||| |||| Sbjct 8194 ATCTTCTTCTTTACCCGTATTCTTTTTCAAAT-TGAGAAATTCGAATATATCTGCATGCC 8136 Query 26040 ATGGTTCTAAATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATC 26099 | || ||||| || ||||||||| || | |||||| |||||||| || || || | Sbjct 8135 AAGGCTCTAAGTATATAGCAAAAGCCCCCGGACGTTTTCCACCACCTTGGTCGACATAAC 8076 Query 26100 TTGCAGTTTCATTGAAAACTTTCAACATTGGAAC 26133 ||| | ||||| | |||||| ||||| Sbjct 8075 GGGCAACATTGTTGAACAGACGCAACATAGGAAC 8042 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253027892510450