Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020 15-01-15] 3,926 sequences; 380,104,241 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq227 118 1e-21 >seq227 Length=351182 Score = 118 bits (130), Expect = 1e-21 Identities = 345/517 (67%), Gaps = 16/517 (3%) Strand=Plus/Minus Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242 || |||||||| || | ||| || || || || || || ||||| || ||||||||||| Sbjct 20018 ACTCCAATAGGTCCCATGCCCGGGCCGCCGCCGCCGTGAGGAATGCAAAATGTCTTATGC 19959 Query 138243 AAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGACCTACCTGTGCA 138302 ||||||| |||| | || || ||||| || | || || ||| || ||||| Sbjct 19958 AAATTTAAATGAGAAACGTCACTTCCATAATCGCCAGGACGACATAAACCCACTTGTGCG 19899 Query 138303 TTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAACGATCTTACATATC 138362 || | ||| || ||||| ||||| || || || |||| | ||| | | | || | Sbjct 19898 TTCATATTGGCGCCATCCAGATACACTTGGCCTCCATGGCGATGTATAAGGTCGCAAA-- 19841 Query 138363 TGTCTGATGTTTGT---TTCAAATACACCATGAGTCGATGGATATGTAATCATAATACAT 138419 |||| | | |||| ||| || || || ||| || || ||||||| ||| | ||| Sbjct 19840 TGTCCG-TAATTGTCTCTTCGAAAACGCCCATAGTTGAAGGGTATGTAACCATTACACAA 19782 Query 138420 GAGAGTTCAAATG--TATTCATGATTGCTTTCTTCTCTAGATCTTTGATGTCTATGTTGC 138477 || || | | || | |||| || |||||| | |||| | ||||||||| | | Sbjct 19781 GAAAGATTACTTGCATGTTCA-GA-TGCTTTATCGCGCAGATGTGCCATGTCTATGCTTC 19724 Query 138478 CATCA-TCATCACACTTGACACCTACAACTTTCATTCCTGCCATGACTGCACTAGCAGGA 138536 ||||| | | || || | | |||||||||| || ||||| ||| ||||||| Sbjct 19723 CATCAGAAAGTATAC-GGATAGGTTCAACTTTCATGCCGGCCATTTGAGCAGAAGCAGGA 19665 Query 138537 TTAGTTCCATGTGCTGACTCTGGTATCAGACATACATTTCTTTTATCATC-TCCTGATCC 138595 || || |||||||| || || || ||||| ||||||| | | || | ||| | Sbjct 19664 TTTGTACCATGTGCAGAAATGGGAATTAGACAAACATTTCGGTGCCCTTCTTTACGATGC 19605 Query 138596 TTGATGATATGCT-TGGATTGCTAACAGTCCTGCATACTCACCCTGTGATCCTGCGTTAG 138654 | | || || ||| | || || || || ||||| || || || | || | || | Sbjct 19604 TCG-TGGTA-GCTGCGTATGGCCCGTAGGCCCGCATATTCGCCTTGAGCACCAGAATTGG 19547 Query 138655 GTTGTAATGATATAGAATCAAAACCTGTGATATCACA 138691 |||| || ||||| |||| |||||||||| ||||| Sbjct 19546 GTTGAAACGATATTTTATCATAACCTGTGATTTCACA 19510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578969985653520