Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020 15-01-15] 3,926 sequences; 380,104,241 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq264 82.4 9e-11 seq53 82.4 9e-11 >seq264 Length=379807 Score = 82.4 bits (90), Expect = 9e-11 Identities = 159/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 175276 GGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTC 175335 ||||| ||||| ||| ||| || | | | ||| ||||| || || || ||||| Sbjct 373869 GGTGCAAAGATACCCAAAGGTGCAATGTTAACTGGTCCCCCAGGGACTGGCAAAACCCTA 373810 Query 175336 CTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATCCAGTG-CTCTGCCGCAAA 175394 || || || | || || ||| | ||||| || || ||| | || ||||| | | Sbjct 373809 CTTGCAAAGGCGACTGCAGGAGAAGCTAATGTGCCTTTTATC-ACTGTCTCTGGTTCCGA 373751 Query 175395 CTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGC 175454 || | || ||||||||||| |||||| || || || || ||| | |||| | | || Sbjct 373750 ATTCTTAGAAATGTTTGTTGGCGTGGGTCCCTCGAGAGTGCGTGATATGTTTGCATTGGC 373691 Query 175455 CCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGC 175506 ||| ||||| || |||||| |||| |||||||| || || ||||| ||| Sbjct 373690 CCGTAAAAATGCTCCTTGTATTCTCTTTATTGATGAAATAGACGCGGTAGGC 373639 >seq53 Length=951126 Score = 82.4 bits (90), Expect = 9e-11 Identities = 159/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 175276 GGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTC 175335 ||||| ||||| ||| ||| || | | | ||| ||||| || || || ||||| Sbjct 924 GGTGCAAAGATACCCAAAGGTGCAATGTTAACTGGTCCCCCAGGGACTGGCAAAACCCTA 865 Query 175336 CTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATCCAGTG-CTCTGCCGCAAA 175394 || || || | || || ||| | ||||| || || ||| | || ||||| | | Sbjct 864 CTTGCAAAGGCGACTGCAGGAGAAGCTAATGTGCCTTTTATC-ACTGTCTCTGGTTCCGA 806 Query 175395 CTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGC 175454 || | || ||||||||||| |||||| || || || || ||| | |||| | | || Sbjct 805 ATTCTTAGAAATGTTTGTTGGCGTGGGTCCCTCGAGAGTGCGTGATATGTTTGCATTGGC 746 Query 175455 CCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGC 175506 ||| ||||| || |||||| |||| |||||||| || || ||||| ||| Sbjct 745 CCGTAAAAATGCTCCTTGTATTCTCTTTATTGATGAAATAGACGCGGTAGGC 694 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596540323346880