Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020 15-01-15] 3,926 sequences; 380,104,241 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq110 176 8e-39 seq343 158 2e-33 seq180 145 1e-29 seq394 140 6e-28 seq539 109 1e-18 >seq110 Length=875010 Score = 176 bits (194), Expect = 8e-39 Identities = 189/250 (76%), Gaps = 0/250 (0%) Strand=Plus/Minus Query 193130 TATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTC 193189 ||||||||| | | |||||||||| ||||| || | ||| || || ||||| || Sbjct 86435 TATACCACCACGGAGACGAAGTACCAAGTGCAAGGTCGACTCCTTTTGTATGTTATAATC 86376 Query 193190 GGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGG 193249 ||||| || | ||| || |||||||| || || ||||| || | |||||||| || Sbjct 86375 CGATAAAGTCCGCCCATCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGG 86316 Query 193250 AGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTC 193309 ||| || ||||||||||| || ||||||| || | |||| |||||| ||||||| ||| Sbjct 86315 AGGAATGCCTTCTTTATCCTGAATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCTC 86256 Query 193310 AACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTTATTAGT 193369 |||||| | ||| |||||||| || || || ||||| ||||| ||||||||||| || | Sbjct 86255 AACTTCCAAAGTAATAGTTTTGCCAGTAAGAGTTTTAACAAAAATTTGCATTTTTATATT 86196 Query 193370 AAAATAATTA 193379 || ||||| Sbjct 86195 CTAAAAATTA 86186 >seq343 Length=430003 Score = 158 bits (174), Expect = 2e-33 Identities = 179/240 (75%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| |||||||| | || || || |||| |||||| || | ||| || |||||| Sbjct 57467 AATTTGCATACCACCGCGCAGACGTAGGACCAAATGCAAGGTTGACTCCTTCTGAATATT 57526 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 ||| ||||| || || | || || | ||| || ||||||||||| || | || || Sbjct 57527 ATAATCGGACAAGGTGCGTCCGTCTTCCAGTTGCTTGCCGGCAAAAATCAAACGTTGCTG 57586 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 || ||||| || |||||||| ||||| || |||| ||| | |||| |||||||| || Sbjct 57587 GTCTGGAGGAATACCTTCTTTGTCTTGAATCTTGGCTTTAACATTTTCGATAGTATCTGA 57646 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 | |||||||| | ||| |||||||| || |||| |||||||| || ||||||||||| Sbjct 57647 CGGTTCAACTTCCAAAGTGATAGTTTTGCCAGTTAATGTTTTTACGAAGATTTGCATTTT 57706 Score = 127 bits (140), Expect = 4e-24 Identities = 144/193 (75%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 ||||| |||||||| | ||| || || |||| |||||| || | ||| || |||||| Sbjct 54233 ATTTAAATACCACCGCGCAAACGTAGGACCAAATGCAAGGTTGACTCCTTCTGAATATTG 54292 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || ||||| || || | || || | |||||| ||||||||||| || | |||||| Sbjct 54293 TAATCGGACAAGGTGCGTCCGTCCTCCAGTTGTTTGCCGGCAAAAATCAAACGTTGTTGA 54352 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || |||||||| |||||||| ||||| | || | ||| ||| || |||||| Sbjct 54353 TCTGGGGGGATTCCTTCCTTATCTTGAATTTTAGCCTTGACATTCTCAATTGTGTCGGAA 54412 Query 193305 GACTCAACTTCTA 193317 | ||| ||||||| Sbjct 54413 GGCTCGACTTCTA 54425 Score = 123 bits (136), Expect = 4e-23 Identities = 169/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || ||||| | | || | ||||| ||| ||||| | ||||| || || Sbjct 48384 ATTTGCATTCCACCGCGGAGACGCAATACCAAATGTAATGTGGATTCTTTCTGTATGTTG 48443 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || || || ||||| | || || || |||||||| ||||| || || | |||||| Sbjct 48444 TAATCAGACAACGTGCGGCCGTCTTCCAACTGTTTTCCAGCAAAGATCAAACGCTGTTGG 48503 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || ||||| || ||||| || ||||| ||||| | ||| | ||| |||||||| || Sbjct 48504 TCTGGAGGAATACCTTCCTTGTCTTGGATTTTTGCTTTAACGTTTTCGATAGTATCCGAC 48563 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || ||||| | ||| || |||||||| || | || || |||||||||||||| Sbjct 48564 GATTCTACTTCCAAAGTGATGGTTTTACCGGTCAAAGTCTTAACAAATATTTGCAT 48619 Score = 122 bits (134), Expect = 2e-22 Identities = 171/240 (71%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || ||||| | ||| || | |||| ||| | ||| | ||||| ||| || Sbjct 48612 ATTTGCATGCCACCACGCAAACGTAAAACCAAATGGAGTGTCGATTCTTTCTGAATGTTG 48671 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| || | || | || || || ||||| || ||||| || || | |||||| Sbjct 48672 TAGTCAGAGAGTGTGCGGCCATTTTCCAACTGTTTGCCAGCAAAGATCAAACGTTGTTGA 48731 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || | || ||||||||||| ||||| ||||| | ||| |||||||||||| Sbjct 48732 TCTGGTGGGACACCCTCTTTATCTTGAATTTTAGTTTTAACATTCTCAATAGTATCGGAT 48791 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTTA 193364 | |||||| || | || |||||||| || || | || || || ||||| ||||||||| Sbjct 48792 GGCTCAACCTCCAAGGTGATAGTTTTTCCAGTCAATGTCTTCACGAATATCTGCATTTTA 48851 Score = 116 bits (128), Expect = 7e-21 Identities = 120/157 (76%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| || |||||||| || || |||||||| | |||||| || ||||| || ||||| || Sbjct 48236 ATCTTCCAATTGTTTGCCAGCGAAAATTAAACGCTGTTGGTCTGGAGGAATACCTTCCTT 48295 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 ||||| ||||| | ||| | ||| |||||||| || | || ||||| | ||| || Sbjct 48296 GTCTTGGATTTTTGCTTTAACGTTTTCGATAGTATCCGACGGTTCTACTTCCAAAGTGAT 48355 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 ||||| || || | ||||| ||||||||||||||| Sbjct 48356 GGTTTTTCCAGTCAAAGTTTTAACAAATATTTGCATT 48392 >seq180 Length=539930 Score = 145 bits (160), Expect = 1e-29 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193134 CCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGAT 193193 ||||||| ||| || | || ||||| ||||| | ||||| ||||||||| ||||| Sbjct 121376 CCACCTCGCAAACGCAACACAAGATGTAATGTGGATTCTTTTTGAATATTATAATCGGAC 121435 Query 193194 AACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGT 193253 || || | | ||| || ||||| ||||| || ||||| |||| || || || || || Sbjct 121436 AATGTGCGACCATCTTCCAATTGCTTTCCAGCGAAAATCAATCGTTGCTGGTCGGGTGGA 121495 Query 193254 ATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACT 193313 ||||| ||||| || || || |||| ||||| |||| ||||| || || | || || Sbjct 121496 ATTCCCTCTTTGTCCTGAATCTTGGCTTTTACATTTTCGATAGTGTCCGAGGGTTCGACC 121555 Query 193314 TCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || ||||| || || || || ||||| ||||||||||| || ||||| || Sbjct 121556 TCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCATATT 121605 >seq394 Length=301216 Score = 140 bits (154), Expect = 6e-28 Identities = 140/182 (77%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 ||||||||||| || || || | ||| || | || || |||||||||||||| | | Sbjct 217065 ATATTATAGTCTGACAAGGTGCGGCCATCTTCCAGCTGCTTACCGGCAAAAATTAAGCGC 217124 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 |||||||| ||||| || |||||||| ||||| ||||| | ||| | || ||||||| Sbjct 217125 TGTTGATCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTGCTTTAACGTTCTCAATAGTA 217184 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 || || | || ||||||| ||| || ||||||||||| | ||||||||||| || ||| Sbjct 217185 TCCGAGGGTTCTACTTCTAAAGTGATGGTTTTACCTGTCAAAGTTTTTACAAAGATCTGC 217244 Query 193359 AT 193360 || Sbjct 217245 AT 217246 Score = 132 bits (146), Expect = 9e-26 Identities = 169/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || || || | ||| || || || | |||||| || | |||||| || ||||| || Sbjct 217245 ATGCCCCCACGCAAACGTAGGACTAAATGCAAAGTTGACTCTTTCTGTATGTTATAATCC 217304 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | || | ||| || ||||| ||||| ||||||||||| | ||| ||||| || Sbjct 217305 GAAAGAGTACGGCCATCCTCCAATTGCTTTCCAGCAAAAATTAAACGCTGCTGATCTGGC 217364 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || |||||||| |||||||| ||||| | || | ||| |||||| || || | |||| Sbjct 217365 GGGATTCCTTCCTTATCTTGAATTTTAGCCTTGACATTCTCAATAGTGTCAGACGGCTCA 217424 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || |||| ||| |||||||| || || | || || || || || |||||||| Sbjct 217425 ACCTCTAAAGTGATAGTTTTGCCAGTCAATGTCTTCACGAAGATCTGCATTTT 217477 >seq539 Length=405157 Score = 109 bits (120), Expect = 1e-18 Identities = 135/185 (73%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 || ||||||| | || ||| | | ||| ||||| || || |||||| |||| |||| Sbjct 240444 ATGTTATAGTTCGTTAGCGTGCAACTATCTTCTAACTGCTTGCCGGCATAAATCAATCGG 240503 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 |||||| || || || || || ||||| || || ||| |||| || ||| ||||||| Sbjct 240504 CGTTGATTTGGTGGAATACCGTCCTTATCCTGAATCTTGCTTTTAATCTTTTCAATAGTA 240563 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 |||| | || || |||| ||| | || || || |||| |||||| ||||| || ||| Sbjct 240564 TCGGTCGGTTCGACATCTAAAGTAAGGGTATTGCCCGTTAACGTTTTCACAAAAATCTGC 240623 Query 193359 ATTTT 193363 ||||| Sbjct 240624 ATTTT 240628 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899610249460320