Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020 15-01-15] 3,926 sequences; 380,104,241 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq158 242 5e-59 seq394 161 1e-34 seq110 145 1e-29 seq343 131 2e-25 seq539 114 2e-20 >seq158 Length=613782 Score = 242 bits (268), Expect = 5e-59 Identities = 379/539 (70%), Gaps = 12/539 (2%) Strand=Plus/Plus Query 18160 CGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCC 18219 |||||| ||| ||| || |||||||| | ||||| | ||| ||| |||||||| || Sbjct 555747 CGCAAATTCACAGTGCAAGCCTTCATCGCGTGATATCATTTCATTAGAGAACGTTAAACC 555806 Query 18220 GGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATAT 18279 |||||||| || | ||| ||||||||||||||||| ||||| || | | ||||||||| Sbjct 555807 TGGCATTATTCCACGTTTCTTTAGCCAAAATATCGAAGCGAAGCTCCCACTAAAGAATAT 555866 Query 18280 ACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATT-GCTCAGTA 18338 ||| || ||| ||||| ||||| | | |||| | ||| | || | | | || Sbjct 555867 ACCTTCGACGGCAGCGAAAGCTATAACACGTTCACCGAAATTAGCCGAATGCGATGA-TA 555925 Query 18339 TCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCATTAA 18398 |||| | |||||||||| | | | | || || |||| || ||||||| Sbjct 555926 TCCAAGCTAGTGCCCATTCCGCCTTCTTCTTAACCAATGGCATTGTCTCAATGGCATTAA 555985 Query 18399 ACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTT 18458 | | || || |||||||| |||| | ||||| || ||||| | ||| |||||||| Sbjct 555986 ATAGATATTCCTTTTCTTTCTCATCTCTGATATATGTTTCGATAAGTAAACTATACATTT 556045 Query 18459 CAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATATT 18518 | || |||| ||||||| || || ||||| | |||||| | | || |||| || Sbjct 556046 CCGAGTGTACATTTTCCATGGCAATTTGAAACCCATAAAAGCAACGTGCTTCGGTTATTT 556105 Query 18519 GAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATGCGA 18578 ||| ||| |||||| ||| || |||||||||||||| ||||| || | | || | Sbjct 556106 GAACCTCTTGGGAAAATCGTTCCACTAAATTCTCATTAACAATACCATCGGATGCCGCAA 556165 Query 18579 AAAATGCCAAAACATATTTAATGAAAT---GTTTTTCATTATCCTTGA--GATTGTTCCA 18633 |||| |||||||| | | ||| |||| ||| ||||| ||| | || ||||| Sbjct 556166 AAAAAGCCAAAACGTGTGAAATAAAATGACGTTCGCCATTA--CTTAACCGA---TTCCA 556220 Query 18634 TTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCT 18692 || || |||||||| || || ||||||||||| | ||||||||||| | ||| |||| Sbjct 556221 ATCGTCGATATCTTTAGAGAGGTCAACTTCTTCTGCAGTCCAAAAAGAGGCTTCCGCCT 556279 >seq394 Length=301216 Score = 161 bits (178), Expect = 1e-34 Identities = 166/215 (77%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | ||||| ||||| || ||||| || || |||||||| ||| || Sbjct 217246 ATGCAGATCTTTGTAAAAACTTTGACAGGTAAAACCATCACTTTAGAAGTAGAACCCTCG 217187 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| ||||| ||| ||||| ||||| ||||||||||| |||||||| ||| Sbjct 217186 GATACTATTGAGAACGTTAAAGCAAAAATTCAAGACAAAGAAGGCATTCCTCCAGATCAA 217127 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || | || |||| ||||||||||||||| |||||| | | || || ||||| |||| Sbjct 217126 CAGCGCTTAATTTTTGCCGGTAAGCAGCTGGAAGATGGCCGCACCTTGTCAGACTATA-- 217069 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGTGTTA 156035 ||||||||| || | ||||| ||||| |||||| Sbjct 217068 ATATCCAAAAGGAATCTACGCTCCATTTGGTGTTA 217034 Score = 116 bits (128), Expect = 5e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 |||||||| || || | || ||||||||||| |||||||| || ||||| || || Sbjct 217477 AAAATGCAGATCTTCGTGAAGACATTGACTGGCAAAACTATCACTTTAGAGGTTGAGCCG 217418 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 ||||| | |||| || || || |||||| |||||||| ||||| || || ||||| Sbjct 217417 TCTGACACTATTGAGAATGTCAAGGCTAAAATTCAAGATAAGGAAGGAATCCCGCCAGAT 217358 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 || || | || |||| ||| || ||||| | || ||| | | ||| | || |||||| Sbjct 217357 CAGCAGCGTTTAATTTTTGCTGGAAAGCAATTGGAGGATGGCCGTACTCTTTCGGATTAT 217298 Query 156000 AATATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || ||| |||||| | || | |||||||| Sbjct 217297 AACATACAGAAAGAGTCAACTTTGCATTTAGT 217266 >seq110 Length=875010 Score = 145 bits (160), Expect = 1e-29 Identities = 152/200 (76%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 ||||||||||| ||| ||||||| | ||||| ||||||||||| || ||||| || | Sbjct 86202 AAAATGCAAATTTTTGTTAAAACTCTTACTGGCAAAACTATTACTTTGGAAGTTGAGCCT 86261 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 || || | |||| ||| || || ||||| || |||||||||||||| |||||||| Sbjct 86262 TCCGACACTATTGAAAATGTCAAGGCCAAAATTCAGGATAAAGAAGGCATTCCTCCAGAT 86321 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 |||||| | ||||||| || ||||| || | |||||| | |||||||| |||||| Sbjct 86322 CAACAACGTTTGATTTTCGCTGGTAAACAATTGGAAGATGGGCGGACTTTATCGGATTAT 86381 Query 156000 AATATATCCAAAGAGGCGAC 156019 || ||| || ||| |||| Sbjct 86382 AACATACAAAAGGAGTCGAC 86401 >seq343 Length=430003 Score = 131 bits (144), Expect = 2e-25 Identities = 140/185 (76%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 ||||||||||| || | |||||||| ||||| |||||||| || || ||||| ||| Sbjct 57706 AAAATGCAAATCTTCGTAAAAACATTAACTGGCAAAACTATCACTTTGGAAGTTGAACCG 57647 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 || |||| ||| ||| || ||| || || ||||| |||||||| || |||||||| Sbjct 57646 TCAGATACTATCGAAAATGTTAAAGCCAAGATTCAAGACAAAGAAGGTATTCCTCCAGAC 57587 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 || ||| | ||||||| |||||| ||||| || ||||| | || || || |||||| Sbjct 57586 CAGCAACGTTTGATTTTTGCCGGCAAGCAACTGGAAGACGGACGCACCTTGTCCGATTAT 57527 Query 156000 AATAT 156004 ||||| Sbjct 57526 AATAT 57522 Score = 125 bits (138), Expect = 1e-23 Identities = 138/184 (75%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||||||| ||||||| |||||||||||||| || || || ||||| ||| || Sbjct 48392 AATGCAAATATTTGTTAAAACTTTGACTGGAAAAACCATCACTTTGGAAGTAGAACCGTC 48333 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 |||| ||| |||||| ||| ||||| ||||| || ||||| || |||||||| || Sbjct 48332 GGATACTATCGAAAACGTTAAAGCAAAAATCCAAGACAAGGAAGGTATTCCTCCAGACCA 48273 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||| | || |||| || || || || | |||||| | | || || || ||||| || Sbjct 48272 ACAGCGTTTAATTTTCGCTGGCAAACAATTGGAAGATGGCCGCACATTGTCTGATTACAA 48213 Query 156002 TATA 156005 ||| Sbjct 48212 CATA 48209 Score = 122 bits (134), Expect = 1e-22 Identities = 157/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 155819 TAAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGA 155878 ||||||||| ||||| | || |||||||||||||||||||| || || || || || Sbjct 48851 TAAAATGCAGATATTCGTGAAGACATTGACTGGAAAAACTATCACCTTGGAGGTTGAGCC 48792 Query 155879 TTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGA 155938 || |||| |||| || || |||| |||||| ||||||||||| || | || ||||| Sbjct 48791 ATCCGATACTATTGAGAATGTTAAAACTAAAATTCAAGATAAAGAGGGTGTCCCACCAGA 48732 Query 155939 ACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTA 155998 |||||| | ||||| | ||| || || ||| | ||| || | | || | || || || Sbjct 48731 TCAACAACGTTTGATCTTTGCTGGCAAACAGTTGGAAAATGGCCGCACACTCTCTGACTA 48672 Query 155999 TAATATATCCAAAGAGGCGACGCTTCATTTAGTGTTA 156035 || || ||||| |||| || ||||| || ||| Sbjct 48671 CAACATTCAGAAAGAATCGACACTCCATTTGGTTTTA 48635 Score = 116 bits (128), Expect = 5e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||||||| |||| || ||||| || ||||| || || || ||||| ||| || Sbjct 48619 ATGCAAATATTTGTTAAGACTTTGACCGGTAAAACCATCACTTTGGAAGTAGAATCGTCG 48560 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| |||||| ||| ||||| ||||| || ||||| || |||||||| ||| Sbjct 48559 GATACTATCGAAAACGTTAAAGCAAAAATCCAAGACAAGGAAGGTATTCCTCCAGACCAA 48500 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || | ||||| | ||| || || ||| | ||||| | | || || || ||||| || Sbjct 48499 CAGCGTTTGATCTTTGCTGGAAAACAGTTGGAAGACGGCCGCACGTTGTCTGATTACAAC 48440 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTT 156034 ||| ||||| | || | ||||| || || Sbjct 48439 ATACAGAAAGAATCCACATTACATTTGGTATT 48408 >seq539 Length=405157 Score = 114 bits (126), Expect = 2e-20 Identities = 166/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 |||||||| || ||| | ||||| || || || || || |||| ||||| |||||| Sbjct 240628 AAAATGCAGATTTTTGTGAAAACGTTAACGGGCAATACCCTTACTTTAGATGTCGAACCG 240569 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 | |||| |||| ||| | |||| || || || ||||| || || || || ||| | Sbjct 240568 ACCGATACTATTGAAAAGATTAAAAGCAAGATTCAGGATAAGGACGGTATTCCACCAAAT 240509 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 |||| |||||||||||||||| |||||| | ||||||| | || || | | ||| Sbjct 240508 CAACGCCGATTGATTTATGCCGGCAAGCAGTTAGAAGATAGTTGCACGCTAACGAACTAT 240449 Query 156000 AATATATCCAAAGAG-GCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || ||| | |||| | ||||| || ||||| || ||| | ||| |||||| Sbjct 240448 AACATA-CAAAAGGGCGCGACTCTCCATTTGGTTTTACGTTTACTTGGCGGT 240398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731836083381600