Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020 15-01-15] 3,926 sequences; 380,104,241 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq343 163 6e-35 seq394 158 2e-33 seq158 156 8e-33 seq110 149 1e-30 seq180 136 8e-27 seq539 87.8 4e-12 >seq343 Length=430003 Score = 163 bits (180), Expect = 6e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | ||||| ||||| |||||||| || | ||||| || || |||||| Sbjct 48390 ATTCCACCGCGGAGACGCAATACCAAATGTAATGTGGATTCTTTCTGTATGTTGTAATCA 48449 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || || || || | || ||||| ||||| ||||||||||| || | |||||| || || Sbjct 48450 GACAACGTGCGGCCGTCTTCCAACTGTTTTCCAGCAAAGATCAAACGCTGTTGGTCTGGA 48509 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || ||||| ||||| ||| || || |||| ||| ||||||||| Sbjct 48510 GGAATACCTTCCTTGTCTTGGATTTTTGCTTTAACGTTTTCGATAGTATCCGACGATTCT 48569 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | ||| ||||||||||| || || || |||| |||||| ||||| Sbjct 48570 ACTTCCAAAGTGATGGTTTTACCGGTCAAAGTCTTAACAAATATTTGCAT 48619 Score = 150 bits (166), Expect = 4e-31 Identities = 143/183 (78%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 || || |||||||| ||||| || |||| ||||||||||| ||||| || ||||| | | Sbjct 48210 ATGTTGTAATCAGACAATGTGCGGCCATCTTCCAATTGTTTGCCAGCGAAAATTAAACGC 48269 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 ||||| || || || || ||||| || ||||| ||||| ||| || || |||| | Sbjct 48270 TGTTGGTCTGGAGGAATACCTTCCTTGTCTTGGATTTTTGCTTTAACGTTTTCGATAGTA 48329 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 || |||| ||||||||| | ||| |||||||| ||||| || ||||||| |||||| ||| Sbjct 48330 TCCGACGGTTCTACTTCCAAAGTGATGGTTTTTCCAGTCAAAGTTTTAACAAATATTTGC 48389 Query 192535 ATT 192537 ||| Sbjct 48390 ATT 48392 Score = 145 bits (160), Expect = 2e-29 Identities = 172/233 (74%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||||||| || ||||| || || | ||| || ||||||||||| Sbjct 57474 ATACCACCGCGCAGACGTAGGACCAAATGCAAGGTTGACTCCTTCTGAATATTATAATCG 57533 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || || || ||| | || |||| ||| || || ||||| || || | || || || || Sbjct 57534 GACAAGGTGCGTCCGTCTTCCAGTTGCTTGCCGGCAAAAATCAAACGTTGCTGGTCTGGA 57593 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||| ||||| || || ||| ||||| |||| |||||||| ||| Sbjct 57594 GGAATACCTTCTTTGTCTTGAATCTTGGCTTTAACATTTTCGATAGTATCTGACGGTTCA 57653 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 ||||| | ||| || ||||| |||||||||||||| | || || |||||||| Sbjct 57654 ACTTCCAAAGTGATAGTTTTGCCAGTTAATGTTTTTACGAAGATTTGCATTTT 57706 Score = 138 bits (152), Expect = 2e-27 Identities = 171/234 (73%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | | |||||| || ||||| | || | ||||| || || || ||| Sbjct 48618 ATGCCACCACGCAAACGTAAAACCAAATGGAGTGTCGATTCTTTCTGAATGTTGTAGTCA 48677 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | ||| || ||| ||||| ||||| ||||||||||| || | |||||||| ||| Sbjct 48678 GAGAGTGTGCGGCCATTTTCCAACTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGT 48737 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || | || ||||||||||| |||||| |||| ||||| |||| ||| || | || Sbjct 48738 GGGACACCCTCTTTATCTTGAATTTTAGTTTTAACATTCTCAATAGTATCGGATGGCTCA 48797 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTTA 192540 || || | || || ||||| ||||| ||||| || | ||||||||||||||| Sbjct 48798 ACCTCCAAGGTGATAGTTTTTCCAGTCAATGTCTTCACGAATATCTGCATTTTA 48851 Score = 129 bits (142), Expect = 1e-24 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 192319 AGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGT 192378 ||||| | ||| || || | ||||| || || || || |||||||| ||||| || Sbjct 45696 AGACGCAGTACCAAGTGAAGAGTAGATTCCTTTTGTATGTTGTAATCAGACAATGTGCGG 45755 Query 192379 TCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCT 192438 |||| ||||||||||| ||||| || ||||| | ||||||||| || || || ||||| Sbjct 45756 CCATCTTCCAATTGTTTGCCAGCGAAAATTAAACGCTGTTGATCTGGAGGAATACCTTCC 45815 Query 192439 TTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTA 192498 || ||||| ||||| ||| || || |||| ||| |||| ||||||||| | ||| Sbjct 45816 TTGTCTTGGATTTTTGCTTTAACGTTTTCGATAGTATCCGACGGTTCTACTTCCAAAGTG 45875 Query 192499 ATGGTTTTACC 192509 |||||||| || Sbjct 45876 ATGGTTTTTCC 45886 >seq394 Length=301216 Score = 158 bits (174), Expect = 2e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 || || | ||||||||| || ||||| | |||| || || ||||||||| || || Sbjct 217020 CCTCCGCGAAGACGTAACACCAAATGGAGCGTAGATTCCTTTTGGATATTATAGTCTGAC 217079 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 || || || |||| |||| || ||||| ||||| ||||| | ||||||||| || || Sbjct 217080 AAGGTGCGGCCATCTTCCAGCTGCTTACCGGCAAAAATTAAGCGCTGTTGATCTGGAGGA 217139 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 || |||||||| ||||| ||||| ||| || || |||| ||| || | ||||||| Sbjct 217140 ATGCCTTCTTTGTCTTGAATTTTTGCTTTAACGTTCTCAATAGTATCCGAGGGTTCTACT 217199 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 |||| ||| ||||||||||| || || ||||| | ||| |||||||| Sbjct 217200 TCTAAAGTGATGGTTTTACCTGTCAAAGTTTTTACAAAGATCTGCAT 217246 Score = 154 bits (170), Expect = 3e-32 Identities = 171/227 (75%), Gaps = 1/227 (0%) Strand=Plus/Plus Query 192321 ACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTC 192380 ||||| |||||||| ||||| | |||||| || |||||||| || | || || | Sbjct 217259 ACGTAGGACTAAATGCAAAGTTGACTCTTTCTGTATGTTATAATCCGAAAGAGTACGGCC 217318 Query 192381 ATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTT 192440 ||| |||||||| || |||||||| ||||| | ||| ||||| || || |||||||| || Sbjct 217319 ATCCTCCAATTGCTTTCCAGCAAAAATTAAACGCTGCTGATCTGGCGGGATTCCTTCCTT 217378 Query 192441 ATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAAT 192500 |||||| |||||| || ||||| |||| || |||| || || |||| ||| || Sbjct 217379 ATCTTGAATTTTAGCCTTGACATTCTCAATAGTGTCAGACGGCTCAACCTCTAAAGTGAT 217438 Query 192501 GGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTTATTAGAAA 192547 ||||| ||||| ||||| || | || ||||||||||| | ||||| Sbjct 217439 AGTTTTGCCAGTCAATGTCTTCACGAAGATCTGCATTTT-TAAGAAA 217484 >seq158 Length=613782 Score = 156 bits (172), Expect = 8e-33 Identities = 459/705 (65%), Gaps = 19/705 (3%) Strand=Plus/Plus Query 49655 ATCGGCTACAAATTCAACATATTGTGACATTAATTCACAATTCATACCCAATAATTTAAA 49714 |||||| ||| |||| | ||||| |||| ||| | ||||| || | ||| | | Sbjct 555579 ATCGGCAACATATTCTATATATTTACACATACTTTCGCTGTTCATGCCAATTAAGTCGAC 555638 Query 49715 TGGTAATGCATCA-TCAATAAATTCtttttctatttctacagcttgtttaattat---ca 49770 |||||| || || |||| ||| |||||||| |||| || || | | | ||||| || Sbjct 555639 TGGTAAGGCCTCTGTCAA-AAACTCTTTTTCAATTTTAACGGCATCTGTTATTATTTCCA 555697 Query 49771 taattatattattttttgataa-tttatatttaatatgattcgcatatattaaACATGCA 49829 ||| || |||| | ||| | | | | ||| || | | ||||| ||| Sbjct 555698 AAATCCG----TTCTTTGCTCGGTTTTTGTATCAAATGTTT---AAACATTAATACCGCA 555750 Query 49830 AAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGC 49889 || ||| || || || || || | ||||| | ||||||| || ||||| |||||| Sbjct 555751 AATTCACAGTGCAAGCCTTCATCGCGTGATATCATTTCATTAGAGAACGTTAAACCTGGC 555810 Query 49890 ATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCC 49949 |||| ||| | || || ||||||||||| || || || || | | |||||||||||| Sbjct 555811 ATTATTCCACGTTTCTTTAGCCAAAATATCGAAGCGAAGCTCCCACTAAAGAATATACCT 555870 Query 49950 TCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTA-TCATCTAATATCCA 50008 ||||| || || ||||| | | | | || || |||| | | | ||||||| Sbjct 555871 TCGACGGCAGCGAAAGCTATAACACGTTCACCGAA-ATTAGCCGAATGCGATGATATCCA 555929 Query 50009 ATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAATAA 50068 | || ||||| || || || || || | | || || | || || || ||||||| Sbjct 555930 AGCTAGTGCCCATTCCGCCTTCTTCTTAACCAATGGCATTGTCTCAATGGCATTAAATAG 555989 Query 50069 TTCAtttttttCATNNNNNNNNNNNNNNNNNNNNNNNATTAATAAAGAATACATTTCAGA 50128 | | ||||| | || | |||| ||||||||| || Sbjct 555990 ATATTCCTTTTCTTTCTCATCTCTGATATATGTTTCGATAAGTAAACTATACATTTCCGA 556049 Query 50129 ATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTTGCTTCTGAATACTGAAC 50188 |||||| |||||| || |||||||| |||||| | |||||| | ||||| Sbjct 556050 GTGTACATTTTCCATGGCAATTTGAAACCCATAAAAGCAACGTGCTTCGGTTATTTGAAC 556109 Query 50189 TTC--GGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTGCGAAG 50246 || || ||| ||||||| |||||||||||| ||||||||||| ||||| || || Sbjct 556110 CTCTTGGGAAA--ATCGTTCCACTAAATTCTCATTAACAATACCATCGGATGCCGCAAAA 556167 Query 50247 AATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCCCAAGATTCA 50306 || || ||||||| | ||||||||| ||| || |||| | |||| || Sbjct 556168 AAAGCCAAAACGTGTGAAATAAAATGACGTTCGCCATTACTTAACCGATTCCAATCGTCG 556227 Query 50307 AGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAATGATGCT 50351 | ||| || || | || ||||||||| |||||||| || ||| Sbjct 556228 ATATCTTTAGAGAGGTCAACTTCTTCTGCAGTCCAAAAAGAGGCT 556272 >seq110 Length=875010 Score = 149 bits (164), Expect = 1e-30 Identities = 175/237 (74%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 192303 AATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATA 192362 ||| |||||||| | ||||| | ||| || || || || | ||| || || ||||| Sbjct 86438 AATTATACCACCACGGAGACGAAGTACCAAGTGCAAGGTCGACTCCTTTTGTATGTTATA 86379 Query 192363 ATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATC 192422 ||| ||||| || || |||| ||||||||||||||||| || || || | |||||||| Sbjct 86378 ATCCGATAAAGTCCGCCCATCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATC 86319 Query 192423 AGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGA 192482 || || || ||||||||||| || ||||| || ||||| |||| || || | Sbjct 86318 TGGAGGAATGCCTTCTTTATCCTGAATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGG 86259 Query 192483 TTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || ||||| | |||||| ||||| ||||| | ||||||| ||| || |||||||| Sbjct 86258 CTCAACTTCCAAAGTAATAGTTTTGCCAGTAAGAGTTTTAACAAAAATTTGCATTTT 86202 >seq180 Length=539930 Score = 136 bits (150), Expect = 8e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 ||||||| | ||| || || | |||||| || | ||||| ||||||||||| || Sbjct 121376 CCACCTCGCAAACGCAACACAAGATGTAATGTGGATTCTTTTTGAATATTATAATCGGAC 121435 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 ||||| || |||| |||||||| || ||||| || || |||| || || || ||||| Sbjct 121436 AATGTGCGACCATCTTCCAATTGCTTTCCAGCGAAAATCAATCGTTGCTGGTCGGGTGGA 121495 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 ||||| ||||| || || || || ||||||||| |||| || || | ||| || Sbjct 121496 ATTCCCTCTTTGTCCTGAATCTTGGCTTTTACATTTTCGATAGTGTCCGAGGGTTCGACC 121555 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || ||||| ||||| || || |||| ||||| | ||| |||||||| || Sbjct 121556 TCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCATATT 121605 >seq539 Length=405157 Score = 87.8 bits (96), Expect = 4e-12 Identities = 153/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 192321 ACGTAATACTAAATGTAAAGTAGC-CTCTTTAGAGATATTATAATCAGATAATGTTCGTT 192379 |||||| || ||||| | ||| || | |||| | || ||||| | | || || | Sbjct 240410 ACGTAAAACCAAATGGAGAGTCGCGCCCTTTTGT-ATGTTATAGTTCGTTAGCGTGCAAC 240468 Query 192380 CATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTT 192439 ||| || || || || || ||| | || |||| |||||| ||||| || || || | Sbjct 240469 TATCTTCTAACTGCTTGCCGGCATAAATCAATCGGCGTTGATTTGGTGGAATACCGTCCT 240528 Query 192440 TATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAA 192499 |||| || || || |||| | || |||| ||| | || ||| || |||| ||||| Sbjct 240529 TATCCTGAATCTTGCTTTTAATCTTTTCAATAGTATCGGTCGGTTCGACATCTAAAGTAA 240588 Query 192500 TGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 ||| || || ||||| ||||| | ||| ||||||||||| Sbjct 240589 GGGTATTGCCCGTTAACGTTTTCACAAAAATCTGCATTTT 240628 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984430478810100