Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020 15-01-15] 3,926 sequences; 380,104,241 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq343 163 5e-35 seq394 154 3e-32 seq110 141 2e-28 seq180 131 3e-25 seq158 111 3e-19 >seq343 Length=430003 Score = 163 bits (180), Expect = 5e-35 Identities = 176/233 (76%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | || |||| || ||||| || || | ||| || |||||||||||| Sbjct 57474 ATACCACCGCGCAGACGTAGGACCAAATGCAAGGTTGACTCCTTCTGAATATTATAATCG 57533 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || || | ||| |||| |||| ||| || || |||||||| || | || ||||| || Sbjct 57534 GACAAGGTGCGTCCGTCTTCCAGTTGCTTGCCGGCAAAAATCAAACGTTGCTGGTCTGGA 57593 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||| ||||| || || ||| ||||| ||||||||||||| ||| Sbjct 57594 GGAATACCTTCTTTGTCTTGAATCTTGGCTTTAACATTTTCGATAGTATCTGACGGTTCA 57653 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 ||||| | ||| || ||||| |||||||||||||| | ||| || |||||||| Sbjct 57654 ACTTCCAAAGTGATAGTTTTGCCAGTTAATGTTTTTACGAAGATTTGCATTTT 57706 Score = 154 bits (170), Expect = 3e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | || || ||||| |||||||| || | ||||| || || ||||| Sbjct 48390 ATTCCACCGCGGAGACGCAATACCAAATGTAATGTGGATTCTTTCTGTATGTTGTAATCA 48449 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || || | || |||| ||||| ||||| |||||||| || || | ||||||||| || Sbjct 48450 GACAACGTGCGGCCGTCTTCCAACTGTTTTCCAGCAAAGATCAAACGCTGTTGGTCTGGA 48509 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || ||||| ||||| ||| || || |||||||| ||||||||| Sbjct 48510 GGAATACCTTCCTTGTCTTGGATTTTTGCTTTAACGTTTTCGATAGTATCCGACGATTCT 48569 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| | ||| ||||||||||| || || || |||| ||||| ||||| Sbjct 48570 ACTTCCAAAGTGATGGTTTTACCGGTCAAAGTCTTAACAAATATTTGCAT 48619 Score = 141 bits (156), Expect = 2e-28 Identities = 141/183 (77%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 || || ||||| || || | || | || ||||||||||| ||||| |||||||| | | Sbjct 48210 ATGTTGTAATCAGACAATGTGCGGCCATCTTCCAATTGTTTGCCAGCGAAAATTAAACGC 48269 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 |||||||| || || || ||||| || ||||| ||||| ||| || || |||||| Sbjct 48270 TGTTGGTCTGGAGGAATACCTTCCTTGTCTTGGATTTTTGCTTTAACGTTTTCGATAGTA 48329 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 || |||| ||||||||| | ||| |||||||| ||||| || ||||||| ||||| ||| Sbjct 48330 TCCGACGGTTCTACTTCCAAAGTGATGGTTTTTCCAGTCAAAGTTTTAACAAATATTTGC 48389 Query 172068 ATT 172070 ||| Sbjct 48390 ATT 48392 Score = 120 bits (132), Expect = 5e-22 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 171855 CGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCG 171914 ||||| || ||||| | || | ||||| ||| || || || || | | || | Sbjct 48633 CGTAAAACCAAATGGAGTGTCGATTCTTTCTGAATGTTGTAGTCAGAGAGTGTGCGGCCA 48692 Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 | ||||| ||||| |||||||| || || | ||||| || ||||| | || |||||| Sbjct 48693 TTTTCCAACTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGTGGGACACCCTCTTTA 48752 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 ||||| |||||| |||| ||||| |||||||| || | || || || | || || Sbjct 48753 TCTTGAATTTTAGTTTTAACATTCTCAATAGTATCGGATGGCTCAACCTCCAAGGTGATA 48812 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTTA 172073 ||||| ||||| ||||| || | |||||||||||||||| Sbjct 48813 GTTTTTCCAGTCAATGTCTTCACGAATATCTGCATTTTA 48851 Score = 111 bits (122), Expect = 3e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 171852 AGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGT 171911 || || | ||| || || | ||||| || || || || ||||| || || | || Sbjct 45696 AGACGCAGTACCAAGTGAAGAGTAGATTCCTTTTGTATGTTGTAATCAGACAATGTGCGG 45755 Query 171912 TCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCT 171971 | || ||||||||||| ||||| |||||||| | |||||| || || || || ||||| Sbjct 45756 CCATCTTCCAATTGTTTGCCAGCGAAAATTAAACGCTGTTGATCTGGAGGAATACCTTCC 45815 Query 171972 TTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTA 172031 || ||||| ||||| ||| || || |||||||| |||| ||||||||| | ||| Sbjct 45816 TTGTCTTGGATTTTTGCTTTAACGTTTTCGATAGTATCCGACGGTTCTACTTCCAAAGTG 45875 Query 172032 ATGGTTTTACC 172042 |||||||| || Sbjct 45876 ATGGTTTTTCC 45886 >seq394 Length=301216 Score = 154 bits (170), Expect = 3e-32 Identities = 165/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 171855 CGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCG 171914 |||| |||||||| ||||| | |||||| || |||||||| || | || || | Sbjct 217260 CGTAGGACTAAATGCAAAGTTGACTCTTTCTGTATGTTATAATCCGAAAGAGTACGGCCA 217319 Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || |||||||| || |||||||||||||| | ||| || || || || |||||||| ||| Sbjct 217320 TCCTCCAATTGCTTTCCAGCAAAAATTAAACGCTGCTGATCTGGCGGGATTCCTTCCTTA 217379 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 ||||| |||||| || ||||| ||||| || |||| || || |||| ||| || Sbjct 217380 TCTTGAATTTTAGCCTTGACATTCTCAATAGTGTCAGACGGCTCAACCTCTAAAGTGATA 217439 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 ||||| ||||| ||||| || | ||| ||||||||||| Sbjct 217440 GTTTTGCCAGTCAATGTCTTCACGAAGATCTGCATTTT 217477 Score = 143 bits (158), Expect = 5e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 || || | ||| ||||| || ||||| | |||| || || |||||||| ||||| Sbjct 217020 CCTCCGCGAAGACGTAACACCAAATGGAGCGTAGATTCCTTTTGGATATTATAGTCTGAC 217079 Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962 || | || | || |||| || ||||| ||||||||||| | |||||| || || || Sbjct 217080 AAGGTGCGGCCATCTTCCAGCTGCTTACCGGCAAAAATTAAGCGCTGTTGATCTGGAGGA 217139 Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACT 172022 || |||||||| ||||| ||||| ||| || || |||||||| || | ||||||| Sbjct 217140 ATGCCTTCTTTGTCTTGAATTTTTGCTTTAACGTTCTCAATAGTATCCGAGGGTTCTACT 217199 Query 172023 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 |||| ||| ||||||||||| || || ||||| | || |||||||| Sbjct 217200 TCTAAAGTGATGGTTTTACCTGTCAAAGTTTTTACAAAGATCTGCAT 217246 >seq110 Length=875010 Score = 141 bits (156), Expect = 2e-28 Identities = 181/249 (73%), Gaps = 3/249 (1%) Strand=Plus/Minus Query 171837 ATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAA 171896 || |||||||| | || || | ||| || || || || | ||| || || |||||| Sbjct 86437 ATTATACCACCACGGAGACGAAGTACCAAGTGCAAGGTCGACTCCTTTTGTATGTTATAA 86378 Query 171897 TCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCA 171956 || ||||||| || | || ||||||||||||||||| ||||| || | ||||| || Sbjct 86377 TCCGATAAAGTCCGCCCATCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCT 86318 Query 171957 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGAT 172016 || || || ||||||||||| || ||||| || ||||| ||||| || || | Sbjct 86317 GGAGGAATGCCTTCTTTATCCTGAATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGC 86258 Query 172017 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTT---TA 172073 || ||||| | |||||| ||||| ||||| | ||||||| || || ||||||| || Sbjct 86257 TCAACTTCCAAAGTAATAGTTTTGCCAGTAAGAGTTTTAACAAAAATTTGCATTTTTATA 86198 Query 172074 TTATAAAAA 172082 || |||||| Sbjct 86197 TTCTAAAAA 86189 >seq180 Length=539930 Score = 131 bits (144), Expect = 3e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 ||||||| | || || || | |||||| || | ||||| |||||||||||| || Sbjct 121376 CCACCTCGCAAACGCAACACAAGATGTAATGTGGATTCTTTTTGAATATTATAATCGGAC 121435 Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962 || | || | || |||||||| || ||||| ||||| |||| || ||||| ||||| Sbjct 121436 AATGTGCGACCATCTTCCAATTGCTTTCCAGCGAAAATCAATCGTTGCTGGTCGGGTGGA 121495 Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACT 172022 ||||| ||||| || || || || ||||||||| ||||| || || | ||| || Sbjct 121496 ATTCCCTCTTTGTCCTGAATCTTGGCTTTTACATTTTCGATAGTGTCCGAGGGTTCGACC 121555 Query 172023 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 || ||||| ||||| || || |||| ||||| | || |||||||| || Sbjct 121556 TCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCATATT 121605 >seq158 Length=613782 Score = 111 bits (122), Expect = 3e-19 Identities = 168/237 (71%), Gaps = 4/237 (2%) Strand=Plus/Plus Query 39419 ATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTGCTTC 39478 ||||||||| || |||||| |||||| || |||||||| |||||| | |||||| Sbjct 556038 ATACATTTCCGAGTGTACATTTTCCATGGCAATTTGAAACCCATAAAAGCAACGTGCTTC 556097 Query 39479 TGAATACTGAACTTC--GGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCA 39536 | ||||| || || ||| ||||||| |||||||||||| ||||||||||| Sbjct 556098 GGTTATTTGAACCTCTTGGGAAA--ATCGTTCCACTAAATTCTCATTAACAATACCATCG 556155 Query 39537 GATGCTGCGAAGAATGCTAAAACATATTTAATAAAATGTTTTTCATTATCTTTTAAATTT 39596 ||||| || || || || ||||| | | ||||||||| ||| || |||| Sbjct 556156 GATGCCGCAAAAAAAGCCAAAACGTGTGAAATAAAATGACGTTCGCCATTACTTAACCGA 556215 Query 39597 TCCCAAGATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAAAGATGCT 39653 | |||| || | ||| || || | || ||||||||| ||||||||||| ||| Sbjct 556216 TTCCAATCGTCGATATCTTTAGAGAGGTCAACTTCTTCTGCAGTCCAAAAAGAGGCT 556272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905091580450800