Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020 15-01-15] 3,926 sequences; 380,104,241 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq158 95.1 4e-14 seq2 87.8 5e-12 >seq158 Length=613782 Score = 95.1 bits (104), Expect = 4e-14 Identities = 297/455 (65%), Gaps = 4/455 (1%) Strand=Plus/Minus Query 133211 CATTTTATTTCTATGATTTTAGCGTTTTTTGCTGCGAGTGATGGTATTGTTCTTGAAAAT 133270 ||||||||||| |||| || |||||||| || |||||||||||| ||| ||| Sbjct 556193 CATTTTATTTCACACGTTTTGGCTTTTTTTGCGGCATCCGATGGTATTGTTAATGAGAAT 556134 Query 133271 TTAGGAACACGGTTTATGGGAGAAGTTCAACTGGCCGAAGCCCGTGCCTTTTATGGGCTA 133330 |||| ||| ||| ||| |||||| | ||||||| ||| |||||||||| | Sbjct 556133 TTAGTGGAACGATTTTCCCAAGAGGTTCAAATAACCGAAGCACGTTGCTTTTATGGGTTT 556074 Query 133331 CAGATTGCGATGGAAAATATCCATTCTATCACATATTCTACTCTAATTGATACTTACATC 133390 || ||||| ||||||||| | || || | ||| | || || || || || ||| Sbjct 556073 CAAATTGCCATGGAAAATGTACACTCGGAAATGTATAGTTTACTTATCGAAACATATATC 556014 Query 133391 AAAGATACCGTCCAGAAGCACAAACTATTCAACGCCATT-AGCGAATTTCCTTGTATTAA 133449 | |||| | ||| | | ||||| || |||||| || ||| | ||| |||| Sbjct 556013 AGAGATGAGAAAGAAAAGGAATATCTATTTAATGCCATTGAGACAATGCCATTG-GTTAA 555955 Query 133450 AAAGAAATCTGACTGGGCTATTAAATGGAT-CCAGGACAAGCGTGCGAGTTTTGCTACTC 133508 ||||| | || ||||| | ||||| || || || || | ||| | | | Sbjct 555954 GAAGAAGGCGGAATGGGCACTAGCTTGGATATCATCGCATTCG-GCTAATTTCGGTGAAC 555896 Query 133509 GTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGTTCTGCTCTATTT 133568 || | | ||||| |||| || || || || || || ||||| ||| || || | Sbjct 555895 GTGTTATAGCTTTCGCTGCCGTCGAAGGTATATTCTTTAGTGGGAGCTTCGCTTCGATAT 555836 Query 133569 TTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACGAACTTATTTCAA 133628 ||||||| || || ||||| || | || || | || ||||| ||| | || ||| Sbjct 555835 TTTGGCTAAAGAAACGTGGAATAATGCCAGGTTTAACGTTCTCTAATGAAATGATATCAC 555776 Query 133629 GGGACGAGGCACTTCACACCGAATTTGCCGTTTTA 133663 | || || | | ||| |||||||| || ||| Sbjct 555775 GCGATGAAGGCTTGCACTGTGAATTTGCGGTATTA 555741 >seq2 Length=3656114 Score = 87.8 bits (96), Expect = 5e-12 Identities = 168/244 (69%), Gaps = 4/244 (2%) Strand=Plus/Minus Query 289111 GCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGTTACA 289170 ||||| ||||||| | ||| ||||||| | | ||| | || | |||| |||| Sbjct 393884 GCTCCTTGACCAACCAGTACTTCATCAAATTCTGGACCGGCAGCATGGAAAAATGGTACA 393825 Query 289171 TTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCT 289230 ||||||||||| || || || | |||||||| || || ||||| || || || ||| | Sbjct 393824 TTTGCTTCGCCAGCAACAGCACGGGCCAGAAGAGTTTTTCCTGTACCTGGAGGACCCACC 393765 Query 289231 AATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTT--ATATTTCTCAGGGCTCTTTA 289288 | | ||| ||||| || | |||||| | || | || |||| || || | |||| Sbjct 393764 AGCAAAACACCCTTAGGCA-GTTTGCCGC-CCAAATTTGAGAATTTTTCGGGATTTTTTA 393707 Query 289289 AAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAA 289348 ||||| || | ||| | ||||| | |||||| ||||| || || |||||| ||| Sbjct 393706 GGAATTCCACCACTTCTTTTAGTTCCTGTTTTGCTTCATCGCAACCCTTAACATCATCAA 393647 Query 289349 AAGT 289352 | || Sbjct 393646 ACGT 393643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471743564815062