Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020 15-01-15] 3,926 sequences; 380,104,241 total letters Query= NC_021901.1 Length=197693 Score E Sequences producing significant alignments: (Bits) Value seq15 91.5 2e-13 seq54 89.7 7e-13 >seq15 Length=1677244 Score = 91.5 bits (100), Expect = 2e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 23093 ATCACGGAGATGGATATAATTTTGATGGTCCAGGTCAAATTTTAGCTCATGCTTTTTTCC 23152 ||||||| ||||| ||||| ||||| ||||| || ||||||||||| ||||| || | | Sbjct 897388 ATCACGGCGATGGCTATAAATTTGACGGTCCTGGACAAATTTTAGCACATGCCTTCTATC 897329 Query 23153 CTGGTACTGGAAGAGGAGGAGATGCTCATTTTGATTTAGAAGAAAATTGG 23202 | || |||| | ||||| ||||||||||| ||| || || |||||| Sbjct 897328 CGGGCGTTGGACGGGGAGGTGATGCTCATTTCGATGACGACGAGAATTGG 897279 >seq54 Length=1451896 Score = 89.7 bits (98), Expect = 7e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 172467 TGGAATGATAATGGTTCTCGTGAATTTTTAGATTTATGCGGGTTTACTGAAAGAAAAGAA 172526 ||||||| ||| | | |||||||||||| ||| ||||||||| | || | ||||| Sbjct 133210 TGGAATGGTAACGCTAGTCGTGAATTTTTGGATAGATGCGGGTTCAGCGACCGTGAAGAA 133151 Query 172527 GGTGATTTAGGCCCAATTTATGGATTTCAATGGAGACATGCAGGGGCTCAATAT 172580 ||||| || || |||||||| || ||||||||| | ||| ||||| |||||| Sbjct 133150 GGTGACTTGGGGCCAATTTACGGTTTTCAATGGCGCCATTTTGGGGCACAATAT 133097 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632458560572880