Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020 15-01-15] 3,926 sequences; 380,104,241 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq394 129 9e-25 seq110 129 9e-25 seq343 118 2e-21 seq180 114 2e-20 >seq394 Length=301216 Score = 129 bits (142), Expect = 9e-25 Identities = 157/214 (73%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || ||||||| || ||||| ||||| || ||| | || ||||||| | Sbjct 217245 TGCAGATCTTTGTAAAAACTTTGACAGGTAAAACCATCACTTTAGAAGTAGAACCCTCGG 217186 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||||||| | || || ||| ||||| ||| |||||||||||||| || ||||||| Sbjct 217185 ATACTATTGAGAACGTTAAAGCAAAAATTCAAGACAAAGAAGGCATTCCTCCAGATCAAC 217126 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | | | |||||||| ||||| || | || ||| | || || |||| ||||||| Sbjct 217125 AGCGCTTAATTTTTGCCGGTAAGCAGCTGGAAGATGGCCGCACCTTGTCAGACTATAATA 217066 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACG 146245 | ||||| ||||| || ||||||| || ||||| Sbjct 217065 TCCAAAAGGAATCTACGCTCCATTTGGTGTTACG 217032 >seq110 Length=875010 Score = 129 bits (142), Expect = 9e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | ||||| | || || ||||| |||||| | || || || | | || Sbjct 86206 TGCAAATTTTTGTTAAAACTCTTACTGGCAAAACTATTACTTTGGAAGTTGAGCCTTCCG 86265 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | |||||| ||||||| || ||||| || ||||||||||||||| || ||||||| Sbjct 86266 ACACTATTGAAAATGTCAAGGCCAAAATTCAGGATAAAGAAGGCATTCCTCCAGATCAAC 86325 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | ||||| || ||||||||||| || ||| | || ||| | |||||||| | Sbjct 86326 AACGTTTGATTTTCGCTGGTAAACAATTGGAAGATGGGCGGACTTTATCGGATTATAACA 86385 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTA 146240 ||||||| || ||||| | || || ||| Sbjct 86386 TACAAAAGGAGTCGACCTTGCACTTGGTA 86414 >seq343 Length=430003 Score = 118 bits (130), Expect = 2e-21 Identities = 169/238 (71%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| |||||| | || ||||| || |||||||| || || | || || || | || Sbjct 48846 TGCAGATATTCGTGAAGACATTGACTGGAAAAACTATCACCTTGGAGGTTGAGCCATCCG 48787 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||||||| | ||||| |||| |||||| ||| |||||| || | ||||| ||||||| Sbjct 48786 ATACTATTGAGAATGTTAAAACTAAAATTCAAGATAAAGAGGGTGTCCCACCAGATCAAC 48727 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | || ||||| || ||||| || || || | || | | || || || | Sbjct 48726 AACGTTTGATCTTTGCTGGCAAACAGTTGGAAAATGGCCGCACACTCTCTGACTACAACA 48667 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTAAATAAATATT 146269 | || ||||||||||| ||||||| || ||||| || | || || | ||||||| Sbjct 48666 TTCAGAAAGAATCGACACTCCATTTGGTTTTACGTTTGCGTGGTGGCATGCAAATATT 48609 Score = 107 bits (118), Expect = 3e-18 Identities = 152/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| ||||||||||||| || ||||| || ||| | || || |||| | Sbjct 57702 TGCAAATCTTCGTAAAAACATTAACTGGCAAAACTATCACTTTGGAAGTTGAACCGTCAG 57643 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 ||||||| ||||||| ||| || || ||| |||||||| ||||| || || || | Sbjct 57642 ATACTATCGAAAATGTTAAAGCCAAGATTCAAGACAAAGAAGGTATTCCTCCAGACCAGC 57583 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | |||||||| || || ||| | || || | || || | |||||||||| Sbjct 57582 AACGTTTGATTTTTGCCGGCAAGCAACTGGAAGACGGACGCACCTTGTCCGATTATAATA 57523 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACG 146245 | || || || || || | ||||| || |||| Sbjct 57522 TTCAGAAGGAGTCAACCTTGCATTTGGTCCTACG 57489 >seq180 Length=539930 Score = 114 bits (126), Expect = 2e-20 Identities = 161/226 (71%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || ||||||| |||| || || || || ||| |||| || |||| | Sbjct 121601 TGCAGATTTTTGTAAAAACCCTAACGGGCAAGACCATCACTCTTGAGGTCGAACCCTCGG 121542 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | ||||| ||||||||||| || || || ||||| || ||||||||||| || | Sbjct 121541 ACACTATCGAAAATGTAAAAGCCAAGATTCAGGACAAAGAGGGAATTCCACCCGACCAGC 121482 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || || | ||||| || || || ||||| || ||| | | || || | |||||||||| Sbjct 121481 AACGATTGATTTTCGCTGGAAAGCAATTGGAAGATGGTCGCACATTGTCCGATTATAATA 121422 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | ||||||||||| || | ||| | || || || || |||| || Sbjct 121421 TTCAAAAAGAATCCACATTACATCTTGTGTTGCGTTTGCGAGGTGG 121376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786127818883920