Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020 15-01-15] 3,926 sequences; 380,104,241 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq180 181 8e-41 seq343 161 8e-35 seq110 150 1e-31 seq394 145 6e-30 seq539 96.9 3e-15 >seq180 Length=539930 Score = 181 bits (200), Expect = 8e-41 Identities = 183/233 (79%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCG- 29617 ||| || | |||||||| ||| | ||| | ||||||||||||||||| |||||||| | Sbjct 121375 TCCACCTCGCAAACGCAACACAAGATGTAATGTGGATTCTTTTTGAATATTATAATCGGA 121434 Query 29618 CAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCG 29677 |||| |||||| ||| || | ||| || ||||| | ||||||| |||||| || || | Sbjct 121435 CAAT-GTGCGACCATCTTCCAATTGCTTTCCAGCGAAAATCAATCGTTGCTGGTCGGGTG 121493 Query 29678 GAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCT 29736 |||| ||||||||||| || ||| || | ||| ||| |||| | |||||| || |||| Sbjct 121494 GAATTCCCTCTTTGTCCTG-AATCTTGGCTTTTACATTTTCGATAGTGTCCGAGGGTTCG 121552 Query 29737 ACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || |||||||| || || ||||| |||| |||||| ||||| |||||||| || Sbjct 121553 ACCTCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCATATT 121605 >seq343 Length=430003 Score = 161 bits (178), Expect = 8e-35 Identities = 176/231 (76%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | || ||| || |||||||| | || || || || ||||| |||||||| | Sbjct 57477 CCACCGCGCAGACGTAGGACCAAATGCAAGGTTGACTCCTTCTGAATATTATAATCGGAC 57536 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| || || ||||| ||||| ||| | ||||| | |||||| || || ||| Sbjct 57537 AAGGTGCGTCCGTCTTCCAGTTGCTTGCCGGCAAAAATCAAACGTTGCTGGTCTGGAGGA 57596 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 ||||| ||||||||||| ||| || | ||| ||| |||| | ||| || || |||| || Sbjct 57597 ATACCTTCTTTGTCTTG-AATCTTGGCTTTAACATTTTCGATAGTATCTGACGGTTCAAC 57655 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 ||| | ||| ||||||||||||||||| ||||| || || || |||||||| Sbjct 57656 TTCCAAAGTGATAGTTTTGCCAGTTAATGTTTTTACGAAGATTTGCATTTT 57706 Score = 150 bits (166), Expect = 1e-31 Identities = 180/242 (74%), Gaps = 2/242 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | |||||| | |||||||| || || |||||||| |||||||| || || | Sbjct 48621 CCACCACGCAAACGTAAAACCAAATGGAGTGTCGATTCTTTCTGAATGTTGTAGTCAGAG 48680 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||| || || | |||||||||||| | ||||| | ||| ||||| || || Sbjct 48681 AGTGTGCGGCCATTTTCCAACTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGTGGG 48740 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 | ||||||||| ||||| |||||| | ||| ||| | || | ||| || || | || || Sbjct 48741 ACACCCTCTTTATCTTG-AATTTTAGTTTTAACATTCTCAATAGTATCGGATGGCTCAAC 48799 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTTAAAACGTAT 29798 || | || |||||||| ||||| || || || || |||||||||||||||||| || | Sbjct 48800 CTCCAAGGTGATAGTTTTTCCAGTCAATGTCTTCACGAATATCTGCATTTTAAAAAGTCT 48859 Query 29799 GC 29800 || Sbjct 48860 GC 48861 Score = 132 bits (146), Expect = 4e-26 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||||| |||||||| | ||||||||||| || ||||| ||||| | | ||||| Sbjct 48404 ACGCAATACCAAATGTAATGTGGATTCTTTCTGTATGTTGTAATCAGACAACGTGCGGCC 48463 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || || | ||||| |||||| | ||||| | || || || || |||||||| || || Sbjct 48464 GTCTTCCAACTGTTTTCCAGCAAAGATCAAACGCTGTTGGTCTGGAGGAATACCTTCCTT 48523 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 |||||| | |||| ||| || |||| | ||| || || ||||||||| | ||| || Sbjct 48524 GTCTTGGATTTTTGCTTTAACGTTTTCGATAGTATCCGACGATTCTACTTCCAAAGTGAT 48583 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| || || || || ||||||||||| ||||| Sbjct 48584 GGTTTTACCGGTCAAAGTCTTAACAAATATTTGCAT 48619 Score = 131 bits (144), Expect = 1e-25 Identities = 151/201 (75%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCG-C 29618 ||||| | | |||||| ||||| ||||| || ||||| ||||| ||||| ||||| | | Sbjct 45687 CCTCCGCGGAGACGCAGTACCAAGTGAAGAGTAGATTCCTTTTGTATGTTGTAATCAGAC 45746 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 |||| |||| ||| || | |||||||||||| | || || | || ||||| || || Sbjct 45747 AATG-TGCGGCCATCTTCCAATTGTTTGCCAGCGAAAATTAAACGCTGTTGATCTGGAGG 45805 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 |||||| || |||||||| | |||| ||| || |||| | ||| || || ||||||| Sbjct 45806 AATACCTTCCTTGTCTTGGATTTTTGCTTTAACGTTTTCGATAGTATCCGACGGTTCTAC 45865 Query 29739 TTCAAGAGTTATAGTTTTGCC 29759 ||| | ||| || ||||| || Sbjct 45866 TTCCAAAGTGATGGTTTTTCC 45886 Score = 127 bits (140), Expect = 2e-24 Identities = 142/187 (76%), Gaps = 2/187 (1%) Strand=Plus/Plus Query 29602 TGAATGTTATAATCCG-CAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAA 29660 || ||||| ||||| | ||||| |||| ||| || | |||||||||||| | || || Sbjct 48207 TGTATGTTGTAATCAGACAATG-TGCGGCCATCTTCCAATTGTTTGCCAGCGAAAATTAA 48265 Query 29661 TCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTAC 29720 | || || || || |||||||| || |||||||| | |||| ||| || |||| | Sbjct 48266 ACGCTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGGATTTTTGCTTTAACGTTTTCGAT 48325 Query 29721 AGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATAT 29780 ||| || || |||||||||| | ||| || ||||| ||||| || |||||||||||||| Sbjct 48326 AGTATCCGACGGTTCTACTTCCAAAGTGATGGTTTTTCCAGTCAAAGTTTTAACAAATAT 48385 Query 29781 CTGCATT 29787 |||||| Sbjct 48386 TTGCATT 48392 Score = 98.7 bits (108), Expect = 8e-16 Identities = 133/183 (73%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | |||||| || |||||||| | || || || || ||||| || ||||| | Sbjct 54242 CCACCGCGCAAACGTAGGACCAAATGCAAGGTTGACTCCTTCTGAATATTGTAATCGGAC 54301 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| || || ||||||||||| ||| | ||||| | ||| ||||| || || Sbjct 54302 AAGGTGCGTCCGTCCTCCAGTTGTTTGCCGGCAAAAATCAAACGTTGTTGATCTGGGGGG 54361 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || || || || ||||| |||||| | |||||| | || | ||||| ||| | || || Sbjct 54362 ATTCCTTCCTTATCTTG-AATTTTAGCCTTGACATTCTCAATTGTGTCGGAAGGCTCGAC 54420 Query 29739 TTC 29741 ||| Sbjct 54421 TTC 54423 >seq110 Length=875010 Score = 150 bits (166), Expect = 1e-31 Identities = 167/220 (76%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || ||||| || | || || || ||||| ||||||||||||| | || || Sbjct 86420 ACGAAGTACCAAGTGCAAGGTCGACTCCTTTTGTATGTTATAATCCGATAAAGTCCGCCC 86361 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || | |||||| ||||| | ||||| | ||| ||||| || ||||| || ||||| Sbjct 86360 ATCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTT 86301 Query 29691 GTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 || || |||||| | |||||| |||| | |||||| ||| | || ||||| | ||| | Sbjct 86300 ATCCTG-AATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCTCAACTTCCAAAGTAA 86242 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 ||||||||||||| | ||||||||||| || |||||||| Sbjct 86241 TAGTTTTGCCAGTAAGAGTTTTAACAAAAATTTGCATTTT 86202 >seq394 Length=301216 Score = 145 bits (160), Expect = 6e-30 Identities = 174/234 (74%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | |||||| || || ||||| | || || ||||| || ||||||||||||| | Sbjct 217248 CCCCCACGCAAACGTAGGACTAAATGCAAAGTTGACTCTTTCTGTATGTTATAATCCGAA 217307 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || || ||| || | ||| || |||||| | || || | |||||||| ||||| Sbjct 217308 AGAGTACGGCCATCCTCCAATTGCTTTCCAGCAAAAATTAAACGCTGCTGATCTGGCGGG 217367 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || || || || ||||| |||||| | |||||| | || | ||||||||| | || || Sbjct 217368 ATTCCTTCCTTATCTTG-AATTTTAGCCTTGACATTCTCAATAGTGTCAGACGGCTCAAC 217426 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTTAAA 29792 || | ||| |||||||||||||| || || || || || ||||||||||| || Sbjct 217427 CTCTAAAGTGATAGTTTTGCCAGTCAATGTCTTCACGAAGATCTGCATTTTTAA 217480 Score = 143 bits (158), Expect = 2e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| | | ||| | ||||||||| ||||| ||||| ||||| || ||||| || | Sbjct 217020 CCTCCGCGAAGACGTAACACCAAATGGAGCGTAGATTCCTTTTGGATATTATAGTCTGAC 217079 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || || || || || ||| | || || | || ||||| || ||| Sbjct 217080 AAGGTGCGGCCATCTTCCAGCTGCTTACCGGCAAAAATTAAGCGCTGTTGATCTGGAGGA 217139 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || || ||||||||||| |||||||| ||| || | || | ||| || || ||||||| Sbjct 217140 ATGCCTTCTTTGTCTTG-AATTTTTGCTTTAACGTTCTCAATAGTATCCGAGGGTTCTAC 217198 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| | ||| || ||||| || || || ||||| ||||| |||||||| Sbjct 217199 TTCTAAAGTGATGGTTTTACCTGTCAAAGTTTTTACAAAGATCTGCAT 217246 >seq539 Length=405157 Score = 96.9 bits (106), Expect = 3e-15 Identities = 154/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 29569 AAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGA 29628 ||||| | |||||||| || || | | ||||| |||||||| | || | |||| | Sbjct 240408 AAACGTAAAACCAAATGGAGAGTCGCGCCCTTTTGTATGTTATAGTTCGTTAGCGTGCAA 240467 Query 29629 GAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCT 29688 ||| || | || ||||| ||||| ||||||| | |||| || |||||||| || Sbjct 240468 CTATCTTCTAACTGCTTGCCGGCATAAATCAATCGGCGTTGATTTGGTGGAATACCGTCC 240527 Query 29689 TTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTT 29748 || || || | || ||| | |||| | ||| || | |||| || || | ||| Sbjct 240528 TTATCCTGAATCTTGCTTTTAATCTTTTCAATAGTATCGGTCGGTTCGACATCTAAAGTA 240587 Query 29749 ATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 | || ||||| ||||| ||||| ||||| ||||||||||| Sbjct 240588 AGGGTATTGCCCGTTAACGTTTTCACAAAAATCTGCATTTT 240628 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385200767983566