Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020 15-01-15] 3,926 sequences; 380,104,241 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq422 82.4 1e-10 seq86 82.4 1e-10 seq15 82.4 1e-10 >seq422 Length=603476 Score = 82.4 bits (90), Expect = 1e-10 Identities = 63/72 (88%), Gaps = 2/72 (3%) Strand=Plus/Minus Query 51988 CATATAATGCTGATTTTGATGGGGATGAAATGAATTTACATGTTCCTCAATCATATGGAG 52047 ||||||| || ||||||||||| |||||||||||||||||||| || ||||| ||||||| Sbjct 5194 CATATAACGCAGATTTTGATGGCGATGAAATGAATTTACATGTACCGCAATC-TATGGAG 5136 Query 52048 -CTACTGCTGAA 52058 ||| |||||| Sbjct 5135 ACTAGAGCTGAA 5124 >seq86 Length=820234 Score = 82.4 bits (90), Expect = 1e-10 Identities = 63/72 (88%), Gaps = 2/72 (3%) Strand=Plus/Minus Query 51988 CATATAATGCTGATTTTGATGGGGATGAAATGAATTTACATGTTCCTCAATCATATGGAG 52047 ||||||| || ||||||||||| |||||||||||||||||||| || ||||| ||||||| Sbjct 817883 CATATAACGCAGATTTTGATGGCGATGAAATGAATTTACATGTACCGCAATC-TATGGAG 817825 Query 52048 -CTACTGCTGAA 52058 ||| |||||| Sbjct 817824 ACTAGAGCTGAA 817813 >seq15 Length=1677244 Score = 82.4 bits (90), Expect = 1e-10 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 23053 ATCATGGGGATGAATATAATTTTGATGGTCCAGGTCAAATTTTAGCTCATGCtttttttC 23112 |||| || |||| ||||| ||||| ||||| || ||||||||||| ||||| || | || Sbjct 897388 ATCACGGCGATGGCTATAAATTTGACGGTCCTGGACAAATTTTAGCACATGCCTTCTATC 897329 Query 23113 CTGGTACTGGAAGAGGAGGAGATGCTCATTTTGAT 23147 | || |||| | ||||| ||||||||||| ||| Sbjct 897328 CGGGCGTTGGACGGGGAGGTGATGCTCATTTCGAT 897294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635146428659280