Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020 15-01-15] 3,926 sequences; 380,104,241 total letters Query= NC_023615.1 Length=196456 Score E Sequences producing significant alignments: (Bits) Value seq15 91.5 2e-13 seq54 89.7 6e-13 seq422 86.0 8e-12 seq86 86.0 8e-12 >seq15 Length=1677244 Score = 91.5 bits (100), Expect = 2e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 22382 ATCACGGAGATGGATATAATTTTGATGGTCCAGGTCAAATTTTAGCTCATGCTTTTTTCC 22441 ||||||| ||||| ||||| ||||| ||||| || ||||||||||| ||||| || | | Sbjct 897388 ATCACGGCGATGGCTATAAATTTGACGGTCCTGGACAAATTTTAGCACATGCCTTCTATC 897329 Query 22442 CTGGTACTGGAAGAGGAGGAGATGCTCATTTTGATTTAGAAGAAAATTGG 22491 | || |||| | ||||| ||||||||||| ||| || || |||||| Sbjct 897328 CGGGCGTTGGACGGGGAGGTGATGCTCATTTCGATGACGACGAGAATTGG 897279 >seq54 Length=1451896 Score = 89.7 bits (98), Expect = 6e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 171679 TGGAATGATAATGGTTCTCGTGAATTTTTAGATTTATGCGGGTTTACTGAAAGAAAAGAA 171738 ||||||| ||| | | |||||||||||| ||| ||||||||| | || | ||||| Sbjct 133210 TGGAATGGTAACGCTAGTCGTGAATTTTTGGATAGATGCGGGTTCAGCGACCGTGAAGAA 133151 Query 171739 GGTGATTTAGGTCCAATTTATGGATTTCAATGGAGACATGCAGGGGCTCAATAT 171792 ||||| || || |||||||| || ||||||||| | ||| ||||| |||||| Sbjct 133150 GGTGACTTGGGGCCAATTTACGGTTTTCAATGGCGCCATTTTGGGGCACAATAT 133097 >seq422 Length=603476 Score = 86.0 bits (94), Expect = 8e-12 Identities = 77/94 (82%), Gaps = 2/94 (2%) Strand=Plus/Minus Query 50416 ATGAATTTAGCTATGACTAAAGCATATAATGCTGATTTTGATGGGGATGAAATGAATTTA 50475 ||||||||| || ||| ||||||| || ||||||||||| ||||||||||||||| Sbjct 5216 ATGAATTTATCTTGTACTTCCCCATATAACGCAGATTTTGATGGCGATGAAATGAATTTA 5157 Query 50476 CATGTTCCTCAATCATATGGAG-CTACTGCTGAA 50508 ||||| || ||||| ||||||| ||| |||||| Sbjct 5156 CATGTACCGCAATC-TATGGAGACTAGAGCTGAA 5124 >seq86 Length=820234 Score = 86.0 bits (94), Expect = 8e-12 Identities = 77/94 (82%), Gaps = 2/94 (2%) Strand=Plus/Minus Query 50416 ATGAATTTAGCTATGACTAAAGCATATAATGCTGATTTTGATGGGGATGAAATGAATTTA 50475 ||||||||| || ||| ||||||| || ||||||||||| ||||||||||||||| Sbjct 817905 ATGAATTTATCTTGTACTTCCCCATATAACGCAGATTTTGATGGCGATGAAATGAATTTA 817846 Query 50476 CATGTTCCTCAATCATATGGAG-CTACTGCTGAA 50508 ||||| || ||||| ||||||| ||| |||||| Sbjct 817845 CATGTACCGCAATC-TATGGAGACTAGAGCTGAA 817813 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628500354831360