Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020 15-01-15] 3,926 sequences; 380,104,241 total letters Query= NC_023719.1 Length=497513 Score E Sequences producing significant alignments: (Bits) Value seq734 289 9e-73 seq861 86.0 2e-11 >seq734 Length=226217 Score = 289 bits (320), Expect = 9e-73 Identities = 657/974 (67%), Gaps = 32/974 (3%) Strand=Plus/Minus Query 188616 TGAAATTGTTGAATTATT-AGATAATCATATTATTGGACAAGAAAAAGC--AAAACGTCA 188672 |||||| || ||||||| | ||||| || ||||||||||||||||||| |||| || Sbjct 154154 TGAAATA-TTCAATTATTTAAATAATTATGTTATTGGACAAGAAAAAGCCAAAAAAGT-- 154098 Query 188673 ATTAGCTGTATCAGTTTATAATCATTATAAGCGCATTAATGCTCTTAATGaaaaatcaaa 188732 | || | || || ||||||||||||||||| ||||| ||| ||||||| | Sbjct 154097 ACTATCAGTGTCTGTTTATAATCATTATAAAAA-ATTAAAA-----AATTTAAAATCACA 154044 Query 188733 aaatgatgatggagtaaagatcaaaaaaTCTAATGTTCTTTTAGTTGGCCCTACTGGTTC 188792 |||| || || | || |||| |||||| | ||| |||| |||||||| Sbjct 154043 AAATAGTGTTGAATTAGG------AAAAAGTAATGTATTATTAATTGGACCTACTGGAAG 153990 Query 188793 AGGTAAAACATTATTTGCTCAAACATTGGCT-GATATGTTACATGTACCTCTAGCTATCT 188851 || ||||||||||| || |||| || || ||| | || || || || | ||| | Sbjct 153989 TGGAAAAACATTATTAGCAGAAACTTTAGCACGATTTCTT-CAAGTTCCATTTATTATTT 153931 Query 188852 CTGATGCAACTTCTTTAACAGAAGCTGGTTATGTAGGTGAAGATGTGGAAAACGTATTGC 188911 ||||||| ||| || |||||||||| || ||||| || ||||| || ||||| || | | Sbjct 153930 CTGATGCGACTACTCTAACAGAAGCCGGATATGTTGGAGAAGACGTAGAAAATATAATAC 153871 Query 188912 TTCGTTTAATCCAAGCAGCTGATTACGATATCGAATTAGCGGAACGTGGAATTGTATATA 188971 | ||| | ||| |||| ||||| || ||| ||| |||||| |||||| Sbjct 153870 AAAGATTATTGCAAAAGTGCGATTTTGATATAAAAAAAGCTCAACACGGAATTATATATA 153811 Query 188972 TCGATGAAGTAGATAAAATTGCTAGAAAATCAGAAAGCACATCCATTACCCGAGATGTAT 189031 |||||||| | ||||||||| | ||||||||||| | |||| ||||| |||| || | Sbjct 153810 TCGATGAAATTGATAAAATTTCGAGAAAATCAGATAATCCATCTATTACAAGAGACGTTT 153751 Query 189032 CTGGCGAAGGAGTACAGCAAGCTTTATTAAAAATCATTGAAGGTACAGTTGCGAAAGTTC 189091 | || ||||||||||| ||||| ||| | ||| | || ||||| || | || ||||| Sbjct 153750 CCGGAGAAGGAGTACAACAAGCATTACTGAAATTAATAGAAGGCACGATAGCTTCAGTTC 153691 Query 189092 CTCCTCAAGGTGGTCGTAAACACCCTCACCAAGAAATGCTTGAAATAGATACAACTAATA 189151 | |||| || | ||||||||||| || ||| | || | |||| || |||| | Sbjct 153690 CAAAAAAAGGCGGAAGAAAACACCCTCAACAGGAATTTTTTCACGTAGACACCTCTAACA 153631 Query 189152 TCTTGTTTATTCTTGGTGGAGCGTTTGATGGTCTTGAAAACATTATCA---AGAGACGCG 189208 | ||||||| ||| ||||| ||| ||| | | || || |||| | |||| Sbjct 153630 TACTGTTTATCTGTGGAGGAGCATTTTCTGGATTAAATAATATAATCAGTCAAAGACTTA 153571 Query 189209 CTACAAAATCAACTTTAGGTTTTGATG--AT-AGTGTAGATAAAGTACAAGAAGAAATCA 189265 | |||| | | | || ||| ||| || | || | | ||||| ||| ||| | Sbjct 153570 TAAAAAAAAATAATATCGGCTTT-ATGGCATCAATGAAAAAAAAGT--CGGAAAAAAATA 153514 Query 189266 AGGATGACAATAAAGTATTCCAACATCTTCAACCGCAAGATATTGTTAAGTATGGTTTAA 189325 || |||||||| |||| | || | ||||| ||||| | |||| | ||| || | Sbjct 153513 AG---TACAATAAATTATTAAATCAAGTACAACCCGAAGATTTAATTAAATTTGGATTGA 153457 Query 189326 TTCCAGAATTTATTGGGCGTGTACCAGTAATCGCAACTCTTAACAAACTTGATCGAGATG 189385 | ||||||||||| || || | || |||| || || | || | || | | Sbjct 153456 TACCAGAATTTATCGGACGATTGCCGATAATGTCAGTACTAGAAGAATTAAATATATCAG 153397 Query 189386 CATTGATTAACATTTTAACTGAGCCGCAAAACGCTATCATTAAACAATATCAGAAATTGT 189445 ||||| ||| |||||| | || |||| ||| | | ||||||||||| || | Sbjct 153396 AATTGACTAAAGTTTTAATTTCTCCAAAAAATGCTCTAGTCAAACAATATCAATTTTTAT 153337 Query 189446 TAGATATGGATGGCGTGGAATTAGAATTCCAAAAAGAAGCATTAGAATCAATTGCAGATG 189505 | || | || || || ||||| || || |||| | ||| || || ||||| | Sbjct 153336 TTAATTTAGAAGGAGTAGAATTGGAGTTTAAAAATAATGCACTAACTTCTATTGCTAAAA 153277 Query 189506 AAGCGATTGAACGTAATACTGGTGCTCGCGGATTACAATCCATTATTGAAAATATTATGT 189565 || | | || ||||||||||| | |||||| ||| ||||| ||| |||| | | Sbjct 153276 AATCTTTAAAAAAGAATACTGGTGCAAGAGGATTAAGATCAATTATAGAATGTATTTTAT 153217 Query 189566 TAGATGTAATGTAT 189579 ||||| ||||||| Sbjct 153216 TAGATACAATGTAT 153203 Score = 132 bits (146), Expect = 2e-25 Identities = 313/467 (67%), Gaps = 12/467 (3%) Strand=Plus/Plus Query 54156 CAACCAGCTACTCCAACTTTCCTAAATGCTGGTAGAAGCAGACGCGGAGAAATGGTTTCT 54215 ||||| || || ||||| || ||||| ||||| || ||| |||||| || || Sbjct 76693 CAACCTGCAACGCCAACATTTTTAAATTGTGGTAAAAAACAACGTGGAGAATACGTATCG 76752 Query 54216 TGTTTCTTATTAGAAATGGATGATAGCTTGAATTCAATTGGTTTCAATATCAATACTGCA 54275 ||||| ||| || ||| || || | || | || ||||| | | || |||| Sbjct 76753 TGTTTTTTACTACGAATAGAAGACAATATGGAATCTATTGGACGTGCTCTTAACGCTGCT 76812 Query 54276 ATGCAATTATCTAAAATTGGCGGCGGCGTTGCCTTAAACCTTTCTAAACTTAGAGGAAGA 54335 | ||| | ||||||| ||||| || || | || | |||| | |||| | | Sbjct 76813 TTACAACTTTCTAAAAGGGGCGGAGGAGTATCATTTTTATTGACTAATTTAAGAGAATCA 76872 Query 54336 AAAGAGCAAATTAAAGGTATTGATGATGCTGCTTCTGGAGTAGTACCAGTTATGAAACTT 54395 | || ||||||| ||||| | | |||| || || | ||||| |||||| | Sbjct 76873 GGCGCGCCAATTAAATGTATTAAAAACCAATCTTCCGGGGTTATTCCAGTAATGAAAATG 76932 Query 54396 TTAGAAGATAGCTTCTCTTATGCTAATCAGCTTGGCCAAAGAAAAGGCGCTGGAGCTGTT 54455 |||| ||| ||| |||||||||||||| || || || |||| || || |||| Sbjct 76933 CTAGAGGATGCCTTTTCTTATGCTAATCAACTAGGTGCGCGACAAGGAGCAGGCTCTGTA 76992 Query 54456 TACTTAAA----CATCTTCCACTGGGATATTATTGAATTCTTAGATACTAA-AAAGATCA 54510 |||||| | |||| |||| |||||| | | || |||||||| || ||||| | Sbjct 76993 TACTTACATGCTCATCATCCA----GATATTTTAAAGTTTTTAGATACCAAGAAAGAA-A 77047 Query 54511 ATGCTGATGAAAAAGCCAGAATTCAATCTTTATCTATTGGATTAATTGCTGAAAAAATCT 54570 | || ||||||||| ||||| || |||||||| | ||| ||||| | | | || Sbjct 77048 ACGCCGATGAAAAAATTAGAATAAAAACTTTATCTTTAGGAGTAATTATTCCAGATATTA 77107 Query 54571 TCTTCCAATTAGCAAAA-AGAAACGAAGAAATGTATGTTTTTGCTCC 54616 || |||||||||||| |||| || |||||||||| | ||| |||| Sbjct 77108 CATTTCAATTAGCAAAAGAGAATCG-AGAAATGTATTTATTTTCTCC 77153 >seq861 Length=102403 Score = 86.0 bits (94), Expect = 2e-11 Identities = 85/108 (79%), Gaps = 4/108 (4%) Strand=Plus/Plus Query 253985 TTTTTCAATAATCTATCAACTAAAATTTGTTTTGCTCTGAATTTTTCTCTACGATGAATA 254044 ||||| || | || ||||||||| |||| || |||||| |||| | |||||||||||| Sbjct 41447 TTTTTTAACATTCGATCAACTAATATTTTTTCTGCTCTAAATTCATTTCTACGATGAAT- 41505 Query 254045 ATAGTT--ACTTTAGATGCAAATTTTGTTAAGTAGACTGCTTCTTCAA 254090 ||| | ||||||||||||| || | |||||| | |||||||||| Sbjct 41506 -TAGGTGCACTTTAGATGCAATATTGGATAAGTAAAGCGCTTCTTCAA 41552 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1591830323922048