Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020 15-01-15] 3,926 sequences; 380,104,241 total letters Query= NC_024369.2 Length=41569 Score E Sequences producing significant alignments: (Bits) Value seq861 132 1e-26 >seq861 Length=102403 Score = 132 bits (146), Expect = 1e-26 Identities = 200/282 (71%), Gaps = 2/282 (1%) Strand=Plus/Minus Query 38200 AGCAGAGGTGTAAACAAGGTGATCTTAATTGGTCACCTTGGTCAAGATCCAGAGGTGCGC 38259 || ||||| | || || || || |||||||| || | || ||| ||||||| || ||| Sbjct 31011 AGTAGAGGAATTAATAAAGTCATTTTAATTGGACATTTAGGGCAAAATCCAGATGTACGC 30952 Query 38260 TATCTACCAAGCGGCGGCGCAGTGGCAAACATCACAATAGCAACGTCTGAGGTTTGGCGG 38319 || | || | || | || || |||| ||||| | ||||| ||||| |||||| Sbjct 30951 TACATTCCTAATGGAAGTGCCGTTACAAATATCACGCTTGCAACATCTGAAAGTTGGCGC 30892 Query 38320 GATAAGCAAACCGGACAGCCAAAAGAGAAAACAGAGTGGCACCGAGTTACTTTGTTTGGG 38379 ||||| | |||||| | ||||| ||||| || |||||| |||| | | ||||| Sbjct 30891 GATAAAAATACCGGAGAAATCAAAGAAAAAACCGAATGGCACAGAGTAGTTATTTTTGGA 30832 Query 38380 AAGCTGGCTGAAGTTGCTGGCGAATACCTTCGAAAAGGATCTCATGTTTATATTGAAGGC 38439 || | |||||| | || || ||||| | |||||||||||||| || ||||| ||||| Sbjct 30831 AAATTAGCTGAAATAGCCGGAGAATATTTACGAAAAGGATCTCAAGTATATATCGAAGG- 30773 Query 38440 CAGCTT-GAAACTAAGAAGTGGCGGGATCAAAGCGGTCAGGA 38480 ||||| |||| | || |||| || |||| ||||| || Sbjct 30772 GAGCTTACAAACAAGAAAATGGCAAGACCAAAATGGTCAAGA 30731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132893004073172