Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020 15-01-15] 3,926 sequences; 380,104,241 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq394 185 2e-41 seq343 174 3e-38 seq110 168 1e-36 seq180 149 1e-30 seq226 91.5 3e-13 seq502 84.2 4e-11 >seq394 Length=301216 Score = 185 bits (204), Expect = 2e-41 Identities = 180/232 (78%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | |||||| || ||||| |||| ||| || ||||||||||| |||||||| || Sbjct 217248 CCCCCACGCAAACGTAGGACTAAATGCAAAGTTGACTCTTTCTGTATGTTATAATCCGAA 217307 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | | || || || | ||| ||||||||||| |||| | || |||||||| || Sbjct 217308 AGAGTACGGCCATCCTCCAATTGCTTTCCAGCAAAAATTAAACGCTGCTGATCTGGCGGG 217367 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 |||||||||||||||||||| || || || ||||| ||||| || ||| || || || Sbjct 217368 ATTCCTTCCTTATCTTGAATTTTAGCCTTGACATTCTCAATAGTGTCAGACGGCTCAACC 217427 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATTA 82815 || ||||| || || ||||| ||||| ||||| || || ||||||||| ||| Sbjct 217428 TCTAAAGTGATAGTTTTGCCAGTCAATGTCTTCACGAAGATCTGCATTTTTA 217479 Score = 163 bits (180), Expect = 6e-35 Identities = 179/238 (75%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 82573 TTTATCACCTACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATAT 82632 |||| | || ||||| | | ||| | || || || || |||||||| || || |||| Sbjct 217009 TTTAGAATCTGCCTCCGCGAAGACGTAACACCAAATGGAGCGTAGATTCCTTTTGGATAT 217068 Query 82633 TATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTT 82692 |||| || || | | | || ||||| || || || || ||||| |||| | |||| Sbjct 217069 TATAGTCTGACAAGGTGCGGCCATCTTCCAGCTGCTTACCGGCAAAAATTAAGCGCTGTT 217128 Query 82693 GATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCAT 82752 |||||||||| || ||||| || |||||||| |||||||| || || ||||| ||||| Sbjct 217129 GATCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTGCTTTAACGTTCTCAATAGTATCCG 217188 Query 82753 TAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||||||||| ||||| || || || |||||||| || |||||||| |||||||| Sbjct 217189 AGGGTTCTACTTCTAAAGTGATGGTTTTACCTGTCAAAGTTTTTACAAAGATCTGCAT 217246 >seq343 Length=430003 Score = 174 bits (192), Expect = 3e-38 Identities = 168/216 (78%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||||| || || || | || |||||||||||||| || |||||||| | | | || Sbjct 48404 ACGCAATACCAAATGTAATGTGGATTCTTTCTGTATGTTGTAATCAGACAACGTGCGGCC 48463 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 |||||| | ||||||||||||||||| | | ||||| |||||||| || |||||||| Sbjct 48464 GTCTTCCAACTGTTTTCCAGCAAAGATCAAACGCTGTTGGTCTGGAGGAATACCTTCCTT 48523 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||||| || |||||||| || ||||| || ||||| | ||||||||||||||| || Sbjct 48524 GTCTTGGATTTTTGCTTTAACGTTTTCGATAGTATCCGACGATTCTACTTCCAAAGTGAT 48583 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || || ||||| ||||| |||||||| ||||| Sbjct 48584 GGTTTTACCGGTCAAAGTCTTAACAAATATTTGCAT 48619 Score = 163 bits (180), Expect = 6e-35 Identities = 176/233 (76%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | || ||| || || || |||| || || || ||||| ||||||||||| | Sbjct 57475 TACCACCGCGCAGACGTAGGACCAAATGCAAGGTTGACTCCTTCTGAATATTATAATCGG 57534 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | |||||||| ||||| || || ||||| || | | ||| || ||||||| Sbjct 57535 ACAAGGTGCGTCCGTCTTCCAGTTGCTTGCCGGCAAAAATCAAACGTTGCTGGTCTGGAG 57594 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||| || ||||||||||| ||||| |||||||| || ||||| ||||| | Sbjct 57595 GAATACCTTCTTTGTCTTGAATCTTGGCTTTAACATTTTCGATAGTATCTGACGGTTCAA 57654 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATT 82814 |||||||||| || || ||||| || || || ||||| || || |||||| || Sbjct 57655 CTTCCAAAGTGATAGTTTTGCCAGTTAATGTTTTTACGAAGATTTGCATTTTT 57707 Score = 159 bits (176), Expect = 7e-34 Identities = 156/201 (78%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 |||||| | | |||||| || ||||| ||||||||||| || ||||| || |||||||| Sbjct 45686 ACCTCCGCGGAGACGCAGTACCAAGTGAAGAGTAGATTCCTTTTGTATGTTGTAATCAGA 45745 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 | | | || ||||| | |||||| ||||| || |||| | |||||||||||||| Sbjct 45746 CAATGTGCGGCCATCTTCCAATTGTTTGCCAGCGAAAATTAAACGCTGTTGATCTGGAGG 45805 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || |||||||| ||||| || |||||||| || ||||| || ||||| |||||||| Sbjct 45806 AATACCTTCCTTGTCTTGGATTTTTGCTTTAACGTTTTCGATAGTATCCGACGGTTCTAC 45865 Query 82763 TTCCAAAGTTATCGTCTTGCC 82783 ||||||||| || || || || Sbjct 45866 TTCCAAAGTGATGGTTTTTCC 45886 Score = 150 bits (166), Expect = 4e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | |||||| | ||| || || || || ||||||||||| || || || ||||| Sbjct 48621 CCACCACGCAAACGTAAAACCAAATGGAGTGTCGATTCTTTCTGAATGTTGTAGTCAGAG 48680 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || | ||| | ||||| ||||||||||| | | |||||||||||| || Sbjct 48681 AGTGTGCGGCCATTTTCCAACTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGTGGG 48740 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 | || || ||||||||||| || | ||| ||||| ||||| ||||| || || || Sbjct 48741 ACACCCTCTTTATCTTGAATTTTAGTTTTAACATTCTCAATAGTATCGGATGGCTCAACC 48800 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 ||||| || || || || || ||||| ||||| || |||||||||||| Sbjct 48801 TCCAAGGTGATAGTTTTTCCAGTCAATGTCTTCACGAATATCTGCATT 48848 Score = 147 bits (162), Expect = 4e-30 Identities = 144/186 (77%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 82626 TGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGT 82685 ||||| || |||||||| | | | || ||||| | |||||| ||||| || |||| Sbjct 48207 TGTATGTTGTAATCAGACAATGTGCGGCCATCTTCCAATTGTTTGCCAGCGAAAATTAAA 48266 Query 82686 CTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATC 82745 | ||||| |||||||| || |||||||| ||||| || |||||||| || ||||| || Sbjct 48267 CGCTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGGATTTTTGCTTTAACGTTTTCGATA 48326 Query 82746 GTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATC 82805 ||||| ||||||||||||||||| || || || || ||||| || || |||||||| Sbjct 48327 GTATCCGACGGTTCTACTTCCAAAGTGATGGTTTTTCCAGTCAAAGTTTTAACAAATATT 48386 Query 82806 TGCATT 82811 |||||| Sbjct 48387 TGCATT 48392 Score = 132 bits (146), Expect = 9e-26 Identities = 145/193 (75%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | |||||| || || || |||| || || || ||||| ||||| ||||| | Sbjct 54240 TACCACCGCGCAAACGTAGGACCAAATGCAAGGTTGACTCCTTCTGAATATTGTAATCGG 54299 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | ||||| || |||||||| || ||||| || | | |||||||||||| | Sbjct 54300 ACAAGGTGCGTCCGTCCTCCAGTTGTTTGCCGGCAAAAATCAAACGTTGTTGATCTGGGG 54359 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | |||||||||||||||||||| || || || ||||| ||||| || || ||| || | Sbjct 54360 GGATTCCTTCCTTATCTTGAATTTTAGCCTTGACATTCTCAATTGTGTCGGAAGGCTCGA 54419 Query 82762 CTTCCAAAGTTAT 82774 |||| || || || Sbjct 54420 CTTCTAAGGTGAT 54432 >seq110 Length=875010 Score = 168 bits (186), Expect = 1e-36 Identities = 180/238 (76%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| || || ||||||| || || || || ||||| |||||||| | Sbjct 86433 TACCACCACGGAGACGAAGTACCAAGTGCAAGGTCGACTCCTTTTGTATGTTATAATCCG 86374 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 ||| | | | || ||||| | |||||| ||||| || || | | |||||||||||||| Sbjct 86373 ATAAAGTCCGCCCATCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGAG 86314 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||| ||||| ||||| || || || ||||||||||| || || ||| || | Sbjct 86313 GAATGCCTTCTTTATCCTGAATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCTCAA 86254 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATTATATT 82819 |||||||||| || || ||||| || | || || ||||| || |||||| ||||||| Sbjct 86253 CTTCCAAAGTAATAGTTTTGCCAGTAAGAGTTTTAACAAAAATTTGCATTTTTATATT 86196 >seq180 Length=539930 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || |||| |||||||| || | || | || |||||||| || ||||||||||| || Sbjct 121376 CCACCTCGCAAACGCAACACAAGATGTAATGTGGATTCTTTTTGAATATTATAATCGGAC 121435 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | ||| ||||| | ||| |||||||| || || | || ||| || || || || Sbjct 121436 AATGTGCGACCATCTTCCAATTGCTTTCCAGCGAAAATCAATCGTTGCTGGTCGGGTGGA 121495 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||| || || || |||||||| |||||||||||||| || || || ||||| || Sbjct 121496 ATTCCCTCTTTGTCCTGAATCTTGGCTTTTACATTTTCGATAGTGTCCGAGGGTTCGACC 121555 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | ||| || |||||||| || | || |||||||| |||||||| Sbjct 121556 TCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCAT 121602 >seq226 Length=749477 Score = 91.5 bits (100), Expect = 3e-13 Identities = 154/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 82593 AAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTA 82652 ||||| | ||| || | ||||| || | || ||||| ||||| | ||| | | Sbjct 358449 AAACGTAAAACCAACTAAAGAGTCGAGTACTTTTGTATGTTATAGCCCATTAGTGTAAAA 358390 Query 82653 CCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCC 82712 || | ||||| || || || ||| | || | | ||| ||| ||||| || ||| Sbjct 358389 CCATGTTCTAACTGCTTGCCCGCATAAATCAAACGGCTCTGACTTGGTGGTATACCGTCC 358330 Query 82713 TTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTT 82772 |||| |||||||| | ||| | ||||||||||||| | ||||| || || ||||| Sbjct 358329 GTATCCTGAATCTTGGTTTTAATTGTTTCAATCGTATCGGTCGGTTCGACGTCTAAAGTC 358270 Query 82773 ATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATTA 82815 || || ||||| || || || | ||||| ||||||||| ||| Sbjct 358269 ATGGTATTGCCGGTTAAAGTTCTCACAAAAATCTGCATTTTTA 358227 >seq502 Length=252103 Score = 84.2 bits (92), Expect = 4e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 198342 TGGAATGCATCGCAAATACAGATGATAAGAGAAGGAAAAATGCATAGTTTTTTAAGAATG 198401 ||||| || | ||| | || |||| |||| || |||||||| ||||||| | ||| Sbjct 236358 TGGAACTCAGCTCAACTGCAATTGATGCGAGAGGGTAAAATGCACGGTTTTTTGCGTATG 236299 Query 198402 TACTGGGCTAAAAAGATACTTGAATGGACAAGAACACCGGAAGACGCTTTG 198452 || |||||||||||||| | |||||| | | || ||||||||||||||| Sbjct 236298 TATTGGGCTAAAAAGATTTTAGAATGGTCTAAAAGCCCGGAAGACGCTTTG 236248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981777812250914