Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020 15-01-15] 3,926 sequences; 380,104,241 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq394 98.7 1e-15 seq343 98.7 1e-15 seq180 96.9 3e-15 >seq394 Length=301216 Score = 98.7 bits (108), Expect = 1e-15 Identities = 150/209 (72%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACG--AGTCCTCGA 133512 ||||| | || |||||||||||||| || |||| || | | | ||| ||||| | Sbjct 217269 AAATGCAAAGTTGACTCTTTCTGTATGTTATAAT--CCGAAAGAGTACGGCCATCCTCCA 217326 Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572 ||||| || || |||| | |||||||| || || ||||| |||||||| || ||| Sbjct 217327 ATTGCTTTCCAGCAAAAATTAAACGCTGCTGATCTGGCGGGATTCCTTCCTTATC-TTGA 217385 Query 133573 TCTTTTG-CTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTG 133631 ||| | ||||| | ||||| ||||| | ||||| || || | |||| |||||| Sbjct 217386 ATTTTAGCCTTGACATTCTCAATAGTGTCAGACGGCTCAACCTCTAAAGTGATAGTTTTG 217445 Query 133632 CCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || |||| || || ||||| |||||||| Sbjct 217446 CCAGTCAATGTCTTCACGAAGATCTGCAT 217474 >seq343 Length=430003 Score = 98.7 bits (108), Expect = 1e-15 Identities = 148/208 (71%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 ||||||| ||||| ||||||||||| |||||||| || |||| ||| || | | Sbjct 48414 AAATGTAATGTGGATTCTTTCTGTATGTTGTAATCAGACAACGTGCGGCCGTCTTCCAAC 48473 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 || || || || | || | ||||| ||||| ||||| || ||||||||||| ||| Sbjct 48474 TGTTTTCCAGCAAAGATCAAACGCTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGGAT- 48532 Query 133575 TTTTGCTTGAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 |||||||| | | | || | || || | | || || || | |||| |||||| || Sbjct 48533 TTTTGCTTTAACGTTTTCGATAGTATCCGACGATTCTACTTCCAAAGTGATGGTTTTACC 48592 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCATG 133661 ||||| ||| || || || || |||||| Sbjct 48593 GGTCAAAGTCTTAACAAATATTTGCATG 48620 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 ||||| | ||| ||||| ||||| ||||| |||||| || ||| ||| || || Sbjct 57498 AAATGCAAGGTTGACTCCTTCTGAATATTATAATCGGACAAGGTGCGTCCGTCTTCCAGT 57557 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 |||||||| || |||| | || |||||||| ||||| || ||||| ||||| ||| Sbjct 57558 TGCTTGCCGGCAAAAATCAAACGTTGCTGGTCTGGAGGAATACCTTCTTTGTCTTGAATC 57617 Query 133575 TTTTGCTTGAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 || |||| | | | || | || || | || || || || | |||| |||||||| Sbjct 57618 TTG-GCTTTAACATTTTCGATAGTATCTGACGGTTCAACTTCCAAAGTGATAGTTTTGCC 57676 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 || | ||||||||||| || ||||| Sbjct 57677 AGTTAATGTTTTTACGAAGATTTGCAT 57703 Score = 89.7 bits (98), Expect = 5e-13 Identities = 125/173 (72%), Gaps = 2/173 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 ||||| | ||| ||||| ||||| |||||||||||| || ||| |||||| || Sbjct 54263 AAATGCAAGGTTGACTCCTTCTGAATATTGTAATCGGACAAGGTGCGTCCGTCCTCCAGT 54322 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 || ||||| || |||| | || || || || || ||||| |||||||| || ||| Sbjct 54323 TGTTTGCCGGCAAAAATCAAACGTTGTTGATCTGGGGGGATTCCTTCCTTATC-TTGAAT 54381 Query 133575 TTTTG-CTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGG 133626 ||| | ||||| | ||||| ||||||| ||||| || || | ||||| || Sbjct 54382 TTTAGCCTTGACATTCTCAATTGTGTCGGAAGGCTCGACTTCTAAGGTGATGG 54434 >seq180 Length=539930 Score = 96.9 bits (106), Expect = 3e-15 Identities = 146/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||||| ||||| ||||| || ||||| |||||| || ||| ||| | || || | | Sbjct 121399 ATGTAATGTGGATTCTTTTTGAATATTATAATCGGACAATGTGCGACCA-TCTTCCAATT 121457 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 |||| || ||| |||| | || ||||||||||| || || || || ||||| |||| Sbjct 121458 GCTTTCCAGCGAAAATCAATCGTTGCTGGTCGGGTGGAATTCCCTCTTTGTCCTGAATCT 121517 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | || | | || | ||||| | ||| || || || | |||| ||| ||||| | Sbjct 121518 TGGCTTTTACATTTTCGATAGTGTCCGAGGGTTCGACCTCAAGAGTGATGGTCTTGCCCG 121577 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 | || |||||||| ||||||||||| Sbjct 121578 TTAGGGTTTTTACAAAAATCTGCAT 121602 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483397076124240