Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020 15-01-15] 3,926 sequences; 380,104,241 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq197 161 2e-34 seq961 158 3e-33 seq362 158 3e-33 seq422 114 3e-20 seq86 114 3e-20 seq383 104 6e-17 seq158 102 2e-16 seq724 89.7 1e-12 >seq197 Length=390979 Score = 161 bits (178), Expect = 2e-34 Identities = 329/480 (69%), Gaps = 9/480 (2%) Strand=Plus/Plus Query 110681 TGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGG 110740 ||| |||||||| ||||| | ||||||||| | ||| ||||| |||||| ||| Sbjct 297810 TGGTCTTGTTCCTATGTTGCGCGTCTTCAACAATCTTGCCTGTTATGTACATCAAGATGG 297869 Query 110741 TA---AGAGAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGA 110797 | | | | || || |||||||||| | ||||||||||| ||||||| || || Sbjct 297870 CAGACAACGTAGAGGTGCACTTGCTATCTACTTAGAACCTTGGCACGCAGATATTTTCGA 297929 Query 110798 ATTCTTAGAACTTCGTAAA-AATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTT 110856 ||| | || ||| ||| ||| || || ||| | | ||||| |||||||||| Sbjct 297930 ATTTCTTGA-CTTGAAAAAGAATACGGGCAAAGAGGAAGATCGTGCACGGGATTTATTTT 297988 Query 110857 ATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATG-GCATGTGGTCT 110915 ||| ||||||| ||||||||||||||||| | || ||| ||| |||| |||||| Sbjct 297989 TTGCTCTGTGGATACCAGATTTATTCATGAAAAGAGTGGAAGCTGATGAGCAT-TGGTCT 298047 Query 110916 CTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGAC 110975 | ||||| || ||| | ||||| | |||||||||||| | | ||||| | Sbjct 298048 TTAATGTGCCCCCATAAATGCCCTGGCTTGGAAGATGTATATGGAGACAAATTTGATAAA 298107 Query 110976 CTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAAACAAATTCCAGCTCAAGAACTT 111035 | ||| |||||||||| | || || || ||| ||| ||||| || | Sbjct 298108 TTGTACATAAAATATGAAGACGAGGGTAAAGCGAATAAAACAATAAAAGCTCGTGAGTTG 298167 Query 111036 TGGTTCAAAATCCTTGAAT-CACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAGA 111094 |||||| ||| | | | | ||| | || || ||||||||||| || | || ||||| Sbjct 298168 TGGTTCGCAAT-ATGCAGTGCCCAACTAGAGACCGGAACTCCTTACATGCTTTACAAAGA 298226 Query 111095 TCATATTAATCGCAAATCTAATCAAATGAATTTAGGAACAATTAAGTCTAGTAATTTGTG 111154 | | |||||||||| ||||||| |||| | || ||||| || | ||||| ||||| Sbjct 298227 TGCTTGTAATCGCAAAAGTAATCAACAGAATGTTGGCACAATAAAATGCAGTAACTTGTG 298286 >seq961 Length=34630 Score = 158 bits (174), Expect = 3e-33 Identities = 558/859 (65%), Gaps = 17/859 (2%) Strand=Plus/Minus Query 110306 TTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCATTGA 110365 |||||| || |||||| | ||||| |||||||| | | || ||| | || | || Sbjct 5074 TTTTGGCTTTAAAACTTTAGAACGGTCTTATTTATTAAAGATTAACGGCAAAATTGTGGA 5015 Query 110366 ACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAAGC 110425 || || ||||| ||||| | ||||| || ||||| ||||| || |||| ||| |||| Sbjct 5014 GCGGCCACAACATATGTTAATGCGTGTCGCCATTGGCATTCACGGCGATGACATTGAAGC 4955 Query 110426 TGTTATTGAATGTTATGATGTATTAAGTAAAAAGAAAGCTATTCATGCTACTCCTACCCT 110485 | ||||||| |||| || | | | | || ||||||| | || || | Sbjct 4954 AGCTATTGAAACTTATAATCTCATGTCGGAGCGTTACTTTACTCATGCTTCCCCAACTTT 4895 Query 110486 ATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTAGGAATTAACGA 110545 |||| || | || | | ||||||| | || ||||| | ||| || || Sbjct 4894 ATTTGGTGCTGCTACCATACGCCCACAATTGTCGTCCTGCTTCTTGCTAACTATGCCGGA 4835 Query 110546 TGATTCTATTGAAGGTATTTATGATG-CTCTTAAAGAAACTGCTCTTATTTCTAAAAACT 110604 || || ||||| |||||| |||| | || | | || |||| |||||||| Sbjct 4834 AGACTCCATTGATGGTATT-ATGAAGGCTGTAGACCAATGTGCTAAAATTTCTAAGTCGG 4776 Query 110605 CTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGCAACAG 110664 | || || || ||| | | ||||| | || ||||||| |||| || | | | Sbjct 4775 CCGGTGGGATAGGTCTAAATATTCATTGCGTACGAGCAAAAGGGACAAAGAT---ATCTG 4719 Query 110665 CGAAGGGTGCT---TCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAA 110721 || |||| || ||| |||||||| ||||| | | |||||| | ||| Sbjct 4718 GTAATGGTGACGTGTCTGATGGCCTTGTTCCTATGTTGCGTCTGTTCAACAATGTTGCCC 4659 Query 110722 AATATGTGAATCAAGGTGGTAAGAGAAAT---GGCTCATTTGCTATCTATCTCGAACCTT 110778 ||||| | ||||||||| | | | || | |||||||| || | || |||| Sbjct 4658 GTTATGTCGACCAAGGTGGTGGAAAACGTCCGGGGGCTTTTGCTATATACTTAGAGCCTT 4599 Query 110779 GGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTT-GAAGAACAA 110837 ||||| |||||||||| ||||| | || || ||| | | || | |||||| | Sbjct 4598 GGCATGCAGATATATTCGAATTTCTC-AATTTGAAAAAGAATACGGGTAAAGAAGAAGAT 4540 Query 110838 AGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAA 110897 | ||||| |||||||||||||| ||||||| | ||| | ||||||||| | || | Sbjct 4539 CGTGCACGGGATTTATTTTATGCTCTGTGGATACCGGATCTTTTCATGAAAAGAGTAGAG 4480 Query 110898 GAAAATG-GCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATA 110956 | ||| |||| |||||||| |||||||| ||| | ||||| | | ||| | || Sbjct 4479 GCTGATGAGCAT-TGGTCTCTAATGTGTCCCCATAAATGCCCTGGCTTGTGTGAAATTTA 4421 Query 110957 TGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAAACA 111016 |||| | | ||||| | | ||| |||||| ||| | || ||||| ||| Sbjct 4420 TGGAGATAAATTTGATAAATTATACATAAAATACGAAGACGAGGGCAAAGCGAATAAAAC 4361 Query 111017 AATTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAAT-CACAAGTTGAAACTGGAACTC 111075 ||| ||||| || | |||||| ||| | | | | ||||| || || || |||| Sbjct 4360 AATAAAAGCTCGTGATTTATGGTTCGCAAT-ATGCAGTGCTCAAGTAGAGACCGGGACTC 4302 Query 111076 CTTATATTTTGTATAAAGATCATATTAATCGCAAATCTAATCAAATGAATTTAGGAACAA 111135 |||| || | || |||||| | |||||| ||| ||||||| |||| | || || | Sbjct 4301 CTTACATGCTTTACAAAGATGCTTGTAATCGTAAAAGTAATCAACAGAATGTTGGCACTA 4242 Query 111136 TTAAGTCTAGTAATTTGTG 111154 | || | ||||| ||||| Sbjct 4241 TAAAATGCAGTAACTTGTG 4223 >seq362 Length=381446 Score = 158 bits (174), Expect = 3e-33 Identities = 558/859 (65%), Gaps = 17/859 (2%) Strand=Plus/Plus Query 110306 TTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCATTGA 110365 |||||| || |||||| | ||||| |||||||| | | || ||| | || | || Sbjct 7660 TTTTGGCTTTAAAACTTTAGAACGGTCTTATTTATTAAAGATTAACGGCAAAATTGTGGA 7719 Query 110366 ACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAAGC 110425 || || ||||| ||||| | ||||| || ||||| ||||| || |||| ||| |||| Sbjct 7720 GCGGCCACAACATATGTTAATGCGTGTCGCCATTGGCATTCACGGCGATGACATTGAAGC 7779 Query 110426 TGTTATTGAATGTTATGATGTATTAAGTAAAAAGAAAGCTATTCATGCTACTCCTACCCT 110485 | ||||||| |||| || | | | | || ||||||| | || || | Sbjct 7780 AGCTATTGAAACTTATAATCTCATGTCGGAGCGTTACTTTACTCATGCTTCCCCAACTTT 7839 Query 110486 ATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTAGGAATTAACGA 110545 |||| || | || | | ||||||| | || ||||| | ||| || || Sbjct 7840 ATTTGGTGCTGCTACCATACGCCCACAATTGTCGTCCTGCTTCTTGCTAACTATGCCGGA 7899 Query 110546 TGATTCTATTGAAGGTATTTATGATG-CTCTTAAAGAAACTGCTCTTATTTCTAAAAACT 110604 || || ||||| |||||| |||| | || | | || |||| |||||||| Sbjct 7900 AGACTCCATTGATGGTATT-ATGAAGGCTGTAGACCAATGTGCTAAAATTTCTAAGTCGG 7958 Query 110605 CTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGCAACAG 110664 | || || || ||| | | ||||| | || ||||||| |||| || | | | Sbjct 7959 CCGGTGGGATAGGTCTAAATATTCATTGCGTACGAGCAAAAGGGACAAAGAT---ATCTG 8015 Query 110665 CGAAGGGTGCT---TCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAA 110721 || |||| || ||| |||||||| ||||| | | |||||| | ||| Sbjct 8016 GTAATGGTGACGTGTCTGATGGCCTTGTTCCTATGTTGCGTCTGTTCAACAATGTTGCCC 8075 Query 110722 AATATGTGAATCAAGGTGGTAAGAGAAAT---GGCTCATTTGCTATCTATCTCGAACCTT 110778 ||||| | ||||||||| | | | || | |||||||| || | || |||| Sbjct 8076 GTTATGTCGACCAAGGTGGTGGAAAACGTCCGGGGGCTTTTGCTATATACTTAGAGCCTT 8135 Query 110779 GGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTT-GAAGAACAA 110837 ||||| |||||||||| ||||| | || || ||| | | || | |||||| | Sbjct 8136 GGCATGCAGATATATTCGAATTTCTC-AATTTGAAAAAGAATACGGGTAAAGAAGAAGAT 8194 Query 110838 AGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAA 110897 | ||||| |||||||||||||| ||||||| | ||| | ||||||||| | || | Sbjct 8195 CGTGCACGGGATTTATTTTATGCTCTGTGGATACCGGATCTTTTCATGAAAAGAGTAGAG 8254 Query 110898 GAAAATG-GCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATA 110956 | ||| |||| |||||||| |||||||| ||| | ||||| | | ||| | || Sbjct 8255 GCTGATGAGCAT-TGGTCTCTAATGTGTCCCCATAAATGCCCTGGCTTGTGTGAAATTTA 8313 Query 110957 TGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAAACA 111016 |||| | | ||||| | | ||| |||||| ||| | || ||||| ||| Sbjct 8314 TGGAGATAAATTTGATAAATTATACATAAAATACGAAGACGAGGGCAAAGCGAATAAAAC 8373 Query 111017 AATTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAAT-CACAAGTTGAAACTGGAACTC 111075 ||| ||||| || | |||||| ||| | | | | ||||| || || || |||| Sbjct 8374 AATAAAAGCTCGTGATTTATGGTTCGCAAT-ATGCAGTGCTCAAGTAGAGACCGGGACTC 8432 Query 111076 CTTATATTTTGTATAAAGATCATATTAATCGCAAATCTAATCAAATGAATTTAGGAACAA 111135 |||| || | || |||||| | |||||| ||| ||||||| |||| | || || | Sbjct 8433 CTTACATGCTTTACAAAGATGCTTGTAATCGTAAAAGTAATCAACAGAATGTTGGCACTA 8492 Query 111136 TTAAGTCTAGTAATTTGTG 111154 | || | ||||| ||||| Sbjct 8493 TAAAATGCAGTAACTTGTG 8511 >seq422 Length=603476 Score = 114 bits (126), Expect = 3e-20 Identities = 137/185 (74%), Gaps = 6/185 (3%) Strand=Plus/Minus Query 305306 AGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATG 305365 ||||||||| || |||||| |||| | |||||| | ||||| ||||||| |||||| Sbjct 5324 AGACATTTGCGGGATGATGATTTGGTTATATTCAATCGTCAACCTACACTGCACAAAATG 5265 Query 305366 TCTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGT 305425 |||||||| |||| || ||||| || | | | ||||| || | ||| || Sbjct 5264 AGTATGATGGGTCATCGTGTTAAAGTGTTGCCATGGTCTACATTCCGTATGAATTTAT-- 5207 Query 305426 GCTTGTACG---CCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCT 305482 ||||||| || ||||| || ||||||||||| |||||||||||| | |||||||| Sbjct 5206 -CTTGTACTTCCCCATATAACGCAGATTTTGATGGCGATGAAATGAATTTACATGTACCG 5148 Query 305483 CAATC 305487 ||||| Sbjct 5147 CAATC 5143 >seq86 Length=820234 Score = 114 bits (126), Expect = 3e-20 Identities = 137/185 (74%), Gaps = 6/185 (3%) Strand=Plus/Minus Query 305306 AGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATG 305365 ||||||||| || |||||| |||| | |||||| | ||||| ||||||| |||||| Sbjct 818013 AGACATTTGCGGGATGATGATTTGGTTATATTCAATCGTCAACCTACACTGCACAAAATG 817954 Query 305366 TCTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGT 305425 |||||||| |||| || ||||| || | | | ||||| || | ||| || Sbjct 817953 AGTATGATGGGTCATCGTGTTAAAGTGTTGCCATGGTCTACATTCCGTATGAATTTAT-- 817896 Query 305426 GCTTGTACG---CCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCT 305482 ||||||| || ||||| || ||||||||||| |||||||||||| | |||||||| Sbjct 817895 -CTTGTACTTCCCCATATAACGCAGATTTTGATGGCGATGAAATGAATTTACATGTACCG 817837 Query 305483 CAATC 305487 ||||| Sbjct 817836 CAATC 817832 >seq383 Length=259186 Score = 104 bits (114), Expect = 6e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 305294 GATATTGTTATCAGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCA 305353 ||||| ||| |||||||| || |||| ||| | |||||| | || || || Sbjct 247173 GATATAGTTGAGAGACATTTATGCGATGGTGATATAGTTTTATTCAATCGCCAGCCCTCG 247232 Query 305354 CTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGA 305413 || ||||||||||| || ||| |||| | | ||| ||| || || || || Sbjct 247233 CTTCATAAAATGTCGATTATGTGTCATCAGGCCAAGGTACAGCCTCAGCGTACTTTCCGT 247292 Query 305414 TTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATG 305473 || |||| | | |||||||||||||||||||| |||||||| || ||||| |||||| || Sbjct 247293 TTTAATGAATGCGCTTGTACGCCTTATAATGCTGATTTTGACGGGGATGAGATGAATTTG 247352 Query 305474 CATGTACCTCAA 305485 ||| |||| ||| Sbjct 247353 CATTTACCACAA 247364 >seq158 Length=613782 Score = 102 bits (112), Expect = 2e-16 Identities = 257/387 (66%), Gaps = 4/387 (1%) Strand=Plus/Minus Query 131796 TTAAAAAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGATTCCGCTAATTTTTCTA 131855 |||| ||||| || |||||||| | ||||| | |||| |||||||| | Sbjct 555958 TTAAGAAGAAGGCGGAATGGGCACTAGCTTGGATATCATCGCATTCGGCTAATTTCGGTG 555899 Query 131856 CAAGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTA 131915 | | || ||||||| ||| || ||||||||||||||| || ||| | | | Sbjct 555898 AACGTGTTATAGCTTTCGCTGCCGTCGAAGGTATATTCTTTAGTGGGAGCTTCGCTTCGA 555839 Query 131916 TCTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCT 131975 | |||||||| ||||| |||||| | ||||| || | | || || ||| || | || | Sbjct 555838 TATTTTGGCTAAAGAAACGTGGAATAATGCCAGGTTTAACGTTCTCTAATGAAATGATAT 555779 Query 131976 CGAGAGATGAAGCATTGCATACTGAATTTGCTATATTAATCTATAGAAAATTTGCTGATA 132035 | | ||||||| ||||| ||||||||| ||||||| | || || ||||| | | Sbjct 555778 CACGCGATGAAGGCTTGCACTGTGAATTTGCGGTATTAATGTTTA-AACATTTGATACAA 555720 Query 132036 AACTTGATGAAAATAA--TATTAAACAACTTATAAGCGAAGCAGTTGATATCGAGAAGGA 132093 || || | ||| || ||| || | |||| || || ||| | || || || || Sbjct 555719 AAACCGA-GCAAAGAACGGATTTTGGAAATAATAACAGATGCCGTTAAAATTGAAAAAGA 555661 Query 132094 GTTTATTACAGAAGCTTTGCCTTGCAATTTGATTGGGATGAATGCTGACTCTATGAAGGA 132153 |||| | ||||| || || || | | || ||||| ||||| || |||| | Sbjct 555660 GTTTTTGACAGAGGCCTTACCAGTCGACTTAATTGGCATGAACAGCGAAAGTATGTGTAA 555601 Query 132154 GTACATTGAATTCGTTGCTGATCGTTT 132180 || || |||| ||||| |||||||| Sbjct 555600 ATATATAGAATATGTTGCCGATCGTTT 555574 >seq724 Length=80110 Score = 89.7 bits (98), Expect = 1e-12 Identities = 153/216 (71%), Gaps = 12/216 (6%) Strand=Plus/Plus Query 279353 TTACGATATGGTAAAATTATTATTTTGACAGACCAAGATTTAGATGGAAGTCACATTAAA 279412 ||||| || |||||| | || || |||| || || ||| |||||| |||||||||| Sbjct 57032 TTACGTTACGGTAAAGTGATGATCATGACCGATCAGGATCAAGATGGTTCTCACATTAAA 57091 Query 279413 GGATTAATACTTAATTGGGTTGATACTTTCTGGCCAGAATTGTT--GAATCAAAATTTTG 279470 || || || |||||| || | || ||||||||||||||| | | || || Sbjct 57092 GGTTTGCTAATTAATTTCATTCACACAAACTGGCCAGAATTGTTACGCTTACCGTTTCTG 57151 Query 279471 TAAGTGTGTTTCAAACACCAATTATTAAGGCAACTAAAGGTAAAAAAGAAGAAGT---AT 279527 || | |||| ||| || ||| |||| || || || ||||| |||||| | | Sbjct 57152 GAA--GAGTTTATAACTCCGATTGTTAAAGCTACGAA---GAAAAATGAAGAACTTTCGT 57206 Query 279528 TTTATTCATTG-CAGAAGTTTGAACAATGGAAAGAT 279562 ||||||||||| ||||| |||||| |||||||| || Sbjct 57207 TTTATTCATTGCCAGAA-TTTGAAGAATGGAAAAAT 57241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186753101090886