Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020 15-01-15] 3,926 sequences; 380,104,241 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq343 138 7e-28 seq180 131 1e-25 seq394 127 1e-24 seq110 91.5 1e-13 >seq343 Length=430003 Score = 138 bits (152), Expect = 7e-28 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | ||||||||| |||||||| || || ||||| || |||||||| || ||| Sbjct 48621 CCACCACGCAAACGTAAAACCAAATGGAGTGTCGATTCTTTCTGAATGTTGTAGTCAGAG 48680 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 |||||||| | | ||||| ||||| || ||||| |||||||| || |||||| | || Sbjct 48681 AGTGTGCGGCCATTTTCCAACTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGTGGG 48740 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 ||||| ||||| || |||||| |||| ||||| || | || ||| || || || Sbjct 48741 ACACCCTCTTTATCTTGAATTTT-AGTTTTAACATTCTCAATAGTATCGGATGGCTCAAC 48799 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| ||||| || || || || || || || |||||||| Sbjct 48800 CTCCAAGGTGATAGTTTTTCCAGTCAATGTCTTCACGAATATCTGCAT 48847 Score = 136 bits (150), Expect = 3e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | || ||||| |||||||| | || ||| || || || || |||||||| Sbjct 57476 ACCACCGCGCAGACGTAGGACCAAATGCAAGGTTGACTCCTTCTGAATATTATAATCGGA 57535 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | |||||| |||| |||| ||| || ||||||||||||||||| ||||| ||| | || Sbjct 57536 CAAGGTGCGTCCGTCTTCCAGTTGCTTGCCGGCAAAAATCAAACGTTGCTGGTCTGGAGG 57595 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||||||||| ||| || | || ||||| || | || || | ||| | Sbjct 57596 AATACCTTCTTTGTCTTGAATCTT-GGCTTTAACATTTTCGATAGTATCTGACGGTTCAA 57654 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | ||||| ||||| || ||||| |||||||| ||||| ||||| Sbjct 57655 CTTCCAAAGTGATAGTTTTGCCAGTTAATGTTTTTACGAAGATTTGCAT 57703 Score = 134 bits (148), Expect = 9e-27 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| || |||||||||| ||| ||||| |||||||||||||| || Sbjct 48393 CCACCGCGGAGACGCAATACCAAATGTAATGTGGATTCTTTCTGTATGTTGTAATCAGAC 48452 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | ||||| |||| ||||| |||||||| ||||| ||||||||||| || ||| | || Sbjct 48453 AACGTGCGGCCGTCTTCCAACTGTTTTCCAGCAAAGATCAAACGCTGTTGGTCTGGAGGA 48512 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | |||||| ||||| ||||| || || ||| | || | || || ||||| || Sbjct 48513 ATACCTTCCTTGTCTTGGATTTT-TGCTTTAACGTTTTCGATAGTATCCGACGATTCTAC 48571 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| |||||||| || || || || ||||| || ||||| Sbjct 48572 TTCCAAAGTGATGGTTTTACCGGTCAAAGTCTTAACAAATATTTGCAT 48619 Score = 111 bits (122), Expect = 1e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | |||||||| |||||||| | || ||| || || || ||||||||||| Sbjct 54241 ACCACCGCGCAAACGTAGGACCAAATGCAAGGTTGACTCCTTCTGAATATTGTAATCGGA 54300 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | |||||| |||| |||| |||||| ||||||||||||||||| || |||||| | || Sbjct 54301 CAAGGTGCGTCCGTCCTCCAGTTGTTTGCCGGCAAAAATCAAACGTTGTTGATCTGGGGG 54360 Query 33642 CACACCTTCTTTGTCGGCAATTTT 33665 | ||||| || || |||||| Sbjct 54361 GATTCCTTCCTTATCTTGAATTTT 54384 Score = 104 bits (114), Expect = 2e-17 Identities = 136/186 (73%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 33565 TGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAA 33624 |||||||||||||| || | |||||| | || ||||||||||| || || ||||| ||| Sbjct 48207 TGTATGTTGTAATCAGACAATGTGCGGCCATCTTCCAATTGTTTGCCAGCGAAAATTAAA 48266 Query 33625 CGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-AC 33683 ||||| || ||| | || | |||||| ||||| ||||| || || ||| | || | Sbjct 48267 CGCTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGGATTTT-TGCTTTAACGTTTTCGAT 48325 Query 33684 GGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGAT 33743 || || | ||| || || | ||||| ||||| || || || ||||| ||||| || Sbjct 48326 AGTATCCGACGGTTCTACTTCCAAAGTGATGGTTTTTCCAGTCAAAGTTTTAACAAATAT 48385 Query 33744 CTGCAT 33749 ||||| Sbjct 48386 TTGCAT 48391 Score = 102 bits (112), Expect = 5e-17 Identities = 92/116 (79%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 ||||| || ||||| || ||||||||||||||||| || | |||||| | || ||| Sbjct 45705 ACCAAGTGAAGAGTAGATTCCTTTTGTATGTTGTAATCAGACAATGTGCGGCCATCTTCC 45764 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTC 33656 |||||||| || || ||||| |||||||| |||||| | || | |||||| ||||| Sbjct 45765 AATTGTTTGCCAGCGAAAATTAAACGCTGTTGATCTGGAGGAATACCTTCCTTGTC 45820 >seq180 Length=539930 Score = 131 bits (144), Expect = 1e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||||| |||||| ||||| | ||||| ||| |||||||| || || |||||||| Sbjct 121376 CCACCTCGCAAACGCAACACAAGATGTAATGTGGATTCTTTTTGAATATTATAATCGGAC 121435 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | |||||| | || |||||||| ||||| || |||||||| || ||||| || | || Sbjct 121436 AATGTGCGACCATCTTCCAATTGCTTTCCAGCGAAAATCAATCGTTGCTGGTCGGGTGGA 121495 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || |||||||| ||| || ||| | ||| || | ||||| | ||| || Sbjct 121496 ATTCCCTCTTTGTCCTGAATCTTGGCTTTTA-CATTTTCGATAGTGTCCGAGGGTTCGAC 121554 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 |||| ||||| || || || |||| ||||||||||| ||||||||| Sbjct 121555 CTCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCATA 121603 >seq394 Length=301216 Score = 127 bits (140), Expect = 1e-24 Identities = 160/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 33534 ACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTC 33593 ||||||||||||||| || || || ||||| || || || || || | ||||| | Sbjct 217031 ACGTAACACCAAATGGAGCGTAGATTCCTTTTGGATATTATAGTCTGACAAGGTGCGGCC 217090 Query 33594 GTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTT 33653 || |||| || || ||||||||||| || ||||| |||||| | || | |||||||| Sbjct 217091 ATCTTCCAGCTGCTTACCGGCAAAAATTAAGCGCTGTTGATCTGGAGGAATGCCTTCTTT 217150 Query 33654 GTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGA 33712 ||| |||||| || || ||| | || | || || | ||| || || | |||| Sbjct 217151 GTCTTGAATTTT-TGCTTTAACGTTCTCAATAGTATCCGAGGGTTCTACTTCTAAAGTGA 217209 Query 33713 TCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | ||||||||||| || |||||||||||||||||||| Sbjct 217210 TGGTTTTACCTGTCAAAGTTTTTACAAAGATCTGCAT 217246 Score = 120 bits (132), Expect = 2e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || || | |||||||| || ||||| | ||| |||||| |||||||| ||||| || Sbjct 217248 CCCCCACGCAAACGTAGGACTAAATGCAAAGTTGACTCTTTCTGTATGTTATAATCCGAA 217307 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || | || |||||||| ||||| |||||||| ||||||||||||||| |||| Sbjct 217308 AGAGTACGGCCATCCTCCAATTGCTTTCCAGCAAAAATTAAACGCTGCTGATCTGGCGGG 217367 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| || || |||||| | | |||| || | ||||| | || || Sbjct 217368 ATTCCTTCCTTATCTTGAATTTT-AGCCTTGACATTCTCAATAGTGTCAGACGGCTCAAC 217426 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| ||||| || || || || || || ||||||||||| Sbjct 217427 CTCTAAAGTGATAGTTTTGCCAGTCAATGTCTTCACGAAGATCTGCAT 217474 >seq110 Length=875010 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | ||||| || | || ||| ||||||||||| ||||| || Sbjct 86432 ACCACCACGGAGACGAAGTACCAAGTGCAAGGTCGACTCCTTTTGTATGTTATAATCCGA 86373 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || || | || ||||||||||| || || ||||||||||| || |||||| | || Sbjct 86372 TAAAGTCCGCCCATCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGAGG 86313 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||||| || |||||| | | |||| || | |||||| | || | Sbjct 86312 AATGCCTTCTTTATCCTGAATTTT-GGCCTTGACATTTTCAATAGTGTCGGAAGGCTCAA 86254 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | || || ||||| || || | ||||| ||||| || ||||| Sbjct 86253 CTTCCAAAGTAATAGTTTTGCCAGTAAGAGTTTTAACAAAAATTTGCAT 86205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328688272129920