Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020 15-01-15] 3,926 sequences; 380,104,241 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq180 109 1e-18 seq343 104 6e-17 seq110 89.7 1e-12 >seq180 Length=539930 Score = 109 bits (120), Expect = 1e-18 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| || || || || || |||||| | || || ||| || ||| Sbjct 121599 CAGATTTTTGTAAAAACCCTAACGGGCAAGACCATCACTCTTGAGGTCGAACCCTCGGAC 121540 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || ||||| ||||| |||||||| || ||||| |||||| || ||| ||| Sbjct 121539 ACTATCGAAAATGTAAAAGCCAAGATTCAGGACAAAGAGGGAATTCCACCCGACCAGCAA 121480 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || | || ||||| |||||||| ||||||||||| | || ||| ||||||| || | Sbjct 121479 CGATTGATTTTCGCTGGAAAGCAATTGGAAGATGGTCGCACATTGTCCGATTATAATATT 121420 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTG 206382 || ||||| || || | || ||||| ||| Sbjct 121419 CAAAAAGAATCCACATTACATCTTGTGTTG 121390 >seq343 Length=430003 Score = 104 bits (114), Expect = 6e-17 Identities = 135/181 (75%), Gaps = 8/181 (4%) Strand=Plus/Minus Query 206197 GGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGT-AAAGCAAAA 206255 |||||||| |||||||||||||| ||| || || || ||||| || ||||||||| Sbjct 45886 GGAAAAACCATCACTTTGGAAGTAGAACCGTCGGATACTATCGAAAACGTTAAAGCAAAA 45827 Query 206256 GATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA-AGACTT--ATCTTCGCCGGAAA 206312 || ||||| || ||||| ||| || || |||| || || || ||||| || || Sbjct 45826 -ATCCAAGACAAGGAAGGTATTCCTCCAGA---TCAACAGCGTTTAATTTTCGCTGGCAA 45771 Query 206313 GCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCA 206372 || ||||||||||| | || ||| | ||||||||| | || || || ||||||||||| Sbjct 45770 ACAATTGGAAGATGGCCGCACATTGTCTGATTACAACATACAAAAGGAATCTACTCTTCA 45711 Query 206373 C 206373 | Sbjct 45710 C 45710 Score = 102 bits (112), Expect = 2e-16 Identities = 141/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || |||||| || || | || || ||||| |||||||||||||| ||| || || Sbjct 48616 CAAATATTTGTTAAGACTTTGACCGGTAAAACCATCACTTTGGAAGTAGAATCGTCGGAT 48557 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || ||||| || ||||||||| || ||||| || ||||| ||| || ||| || Sbjct 48556 ACTATCGAAAACGTTAAAGCAAAA-ATCCAAGACAAGGAAGGTATTCCTCCAGACCAACA 48498 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | | ||||| || ||||| ||||||||||| || | || ||| | ||||||||| | Sbjct 48497 GCGTTTGATCTTTGCTGGAAAACAGTTGGAAGACGGCCGCACGTTGTCTGATTACAACAT 48438 Query 206352 CCAGAAAGAGTCTAC 206366 |||||||| || || Sbjct 48437 ACAGAAAGAATCCAC 48423 Score = 102 bits (112), Expect = 2e-16 Identities = 134/183 (73%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || || ||||| |||||||||||||| ||| || || || ||||| Sbjct 57688 AAAACATTAACTGGCAAAACTATCACTTTGGAAGTTGAACCGTCAGATACTATCGAAAAT 57629 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| || ||||||||| |||||||| ||| || ||| ||| | | || || Sbjct 57628 GTTAAAGCCAA-GATTCAAGACAAAGAAGGTATTCCTCCAGACCAGCAACGTTTGATTTT 57570 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||||| ||||| ||||||| ||| | || ||| ||||||| || | ||||| ||||| Sbjct 57569 TGCCGGCAAGCAACTGGAAGACGGACGCACCTTGTCCGATTATAATATTCAGAAGGAGTC 57510 Query 206364 TAC 206366 || Sbjct 57509 AAC 57507 Score = 93.3 bits (102), Expect = 1e-13 Identities = 129/178 (72%), Gaps = 2/178 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || |||||| ||||| | || |||||||| |||||||||||||| ||| || || Sbjct 48388 CAAATATTTGTTAAAACTTTGACTGGAAAAACCATCACTTTGGAAGTAGAACCGTCGGAT 48329 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || ||||| || ||||||||| || ||||| || ||||| ||| || ||| || Sbjct 48328 ACTATCGAAAACGTTAAAGCAAAA-ATCCAAGACAAGGAAGGTATTCCTCCAGACCAACA 48270 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAAC 206349 | | || ||||| || || || ||||||||||| | || ||| | ||||||||| Sbjct 48269 GCGTTTAATTTTCGCTGGCAAACAATTGGAAGATGGCCGCACATTGTCTGATTACAAC 48212 >seq110 Length=875010 Score = 89.7 bits (98), Expect = 1e-12 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || ||||| || ||||||||||| || ||| ||||| | ||| Sbjct 86220 AAAACTCTTACTGGCAAAACTATTACTTTGGAAGTTGAGCCTTCCGACACTATTGAAAAT 86279 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| || ||||| || |||||||| ||| || || ||| | | || ||| Sbjct 86280 GTCAAGGCCAAAATTCAGGATAAAGAAGGCATTCCTCCAGATCAACAACGTTTGATTTTC 86339 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || || || ||||||||||| ||||||| | ||||| ||| | || || ||||| Sbjct 86340 GCTGGTAAACAATTGGAAGATGGGCGGACTTTATCGGATTATAACATACAAAAGGAGTCG 86399 Query 206365 AC 206366 || Sbjct 86400 AC 86401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181761352197846