Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020 15-01-15] 3,926 sequences; 380,104,241 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq180 129 5e-25 seq343 105 6e-18 seq394 100 3e-16 seq197 96.9 3e-15 >seq180 Length=539930 Score = 129 bits (142), Expect = 5e-25 Identities = 170/234 (73%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 25171 CAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGC 25230 ||| ||||| | ||||||||||| |||| || || | ||||| | || |||||| | Sbjct 121606 CAATATGCAGATTTTTGTAAAAACCCTAACGGGCAAGACCATCACTCTTGAGGTCGAACC 121547 Query 25231 CAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGA 25290 | || |||||||| | |||||| || ||| || |||||||| || || ||||| Sbjct 121546 CTCGGACACTATCGAAAATGTAAAAGCCAAGATTCAGGACAAAGAGGGAATTCCACCCGA 121487 Query 25291 TCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGAT 25348 |||||| || | |||| || || || ||| | ||||||| | | | |||| |||| Sbjct 121486 CCAGCAACGATTGATTTTCGCTGGAAAGCAATTGGAAGATGGTCGCACATTGTC--CGAT 121429 Query 25349 TACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGA 25402 || |||||||||||||||||||| | ||| | ||||| | ||| |||| ||| Sbjct 121428 TATAATATTCAAAAAGAATCCACATTACATCTTGTGTTGCGTTTGCGAGGTGGA 121375 >seq343 Length=430003 Score = 105 bits (116), Expect = 6e-18 Identities = 153/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 25172 AACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCC 25231 || |||||| | || |||||||||||||| || ||| | ||||| | ||||| ||| | Sbjct 57706 AAAATGCAAATCTTCGTAAAAACATTAACTGGCAAAACTATCACTTTGGAAGTTGAACCG 57647 Query 25232 AACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGAT 25291 ||||||||||| | || ||| || ||| || ||||| ||||| || || || Sbjct 57646 TCAGATACTATCGAAAATGTTAAAGCCAAGATTCAAGACAAAGAAGGTATTCCTCCAGAC 57587 Query 25292 CAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA--ATGTCAGCGATT 25349 |||||| | | |||| | |||||| ||||| ||||| | | | |||| ||||| Sbjct 57586 CAGCAACGTTTGATTTTTGCCGGCAAGCAACTGGAAGACGGACGCACCTTGTC--CGATT 57529 Query 25350 ACAATATTCAAAAAGAATCCACCATTCATTTAGT 25383 | |||||||| || || || ||| | ||||| || Sbjct 57528 ATAATATTCAGAAGGAGTCAACCTTGCATTTGGT 57495 Score = 89.7 bits (98), Expect = 5e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 25172 AACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCC 25231 || ||||| | || || || ||||| || |||||| | ||||| | || || || ||| Sbjct 48850 AAAATGCAGATATTCGTGAAGACATTGACTGGAAAAACTATCACCTTGGAGGTTGA-GCC 48792 Query 25232 AAC-GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGA 25290 | | |||||||| ||| | || ||| |||||| |||||||||||| | || || || Sbjct 48791 ATCCGATACTATTGAGAATGTTAAAACTAAAATTCAAGATAAAGAGGGTGTCCCACCAGA 48732 Query 25291 TCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTA 25350 ||| ||| | | || | | |||||||| | ||| ||| | | || || || Sbjct 48731 TCAACAACGTTTGATCTTTGCTGGCAAACAGTTGGAAAATGGCCGCACACTCTCTGACTA 48672 Query 25351 CAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||| ||||| |||||||| || | ||||| || ||| | ||| | || || Sbjct 48671 CAACATTCAGAAAGAATCGACACTCCATTTGGTTTTACGTTTGCGTGGTGG 48621 >seq394 Length=301216 Score = 100 bits (110), Expect = 3e-16 Identities = 153/216 (71%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 |||||| | ||||||||||| || || || ||| | ||||| | ||||| ||| || Sbjct 217247 CATGCAGATCTTTGTAAAAACTTTGACAGGTAAAACCATCACTTTAGAAGTAGAACCCTC 217188 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 |||||||| ||| | || ||| ||||||| || ||||| || || || || ||||| Sbjct 217187 GGATACTATTGAGAACGTTAAAGCAAAAATTCAAGACAAAGAAGGCATTCCTCCAGATCA 217128 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA--ATGTCAGCGATTAC 25351 || | | |||| | ||| || || || ||||||| | | ||||| || || Sbjct 217127 ACAGCGCTTAATTTTTGCCGGTAAGCAGCTGGAAGATGGCCGCACCTTGTCA--GACTAT 217070 Query 25352 AATATTCAAAAAGAATCCACCATTCATTTAGTGTTA 25387 ||||| ||||| ||||| || | ||||| |||||| Sbjct 217069 AATATCCAAAAGGAATCTACGCTCCATTTGGTGTTA 217034 >seq197 Length=390979 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/200 (72%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 136656 ATTCGCGGCAGGTTTAGTTCTCAGATAGTACATGCCCGTCTTTAAACCCTTCTCCCAGGA 136715 |||||| || || || ||| | ||||| ||||| || ||||||||||| | ||| Sbjct 299238 ATTCGCTGCTGGCTTTGTTTTTAGATAATACATACCGGTCTTTAAACCGGCTTTCCATCC 299179 Query 136716 ATAATTATGTATAGATGACAAAATTTTATAGCTCGGATCGGCCACGAAAAGATTTAGCGA 136775 |||| ||||||||| ||||| | ||| || || || || ||| | ||| | || Sbjct 299178 ATAAAAATGTATAGAAGACAATTTACCATAACTAGGTTCAGCTACGTGTATATTGAATGA 299119 Query 136776 TTGGCTCTGATCGATGTAAGGTCCGCGGTCTGCGGCCATGTTCAATAG-TACTTTTTGCT 136834 |||||| || |||||| ||| ||||| || || |||||||| ||| | | ||| | Sbjct 299118 TTGGCTTTGGTCGATGAAAGCACCGCGATCGGCAGCCATGTT-AATGGTTGATTTCACCG 299060 Query 136835 TAATTTCCCAAGCGGTTTTA 136854 |||||||||| | |||||| Sbjct 299059 AAATTTCCCAAACCGTTTTA 299040 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445072556992320