Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020 15-01-15] 3,926 sequences; 380,104,241 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq110 98.7 8e-16 seq343 87.8 1e-12 seq394 86.0 5e-12 >seq110 Length=875010 Score = 98.7 bits (108), Expect = 8e-16 Identities = 162/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 106236 TTTGTCATTTATAAGAGTTTAAAAATGCAAATTTTTGTTAAAACATTGACTGGCAAGACC 106295 ||| | | || | ||| | ||||||||||||||||||||||||| | |||||||| || Sbjct 86181 TTTCTTAATTTTTAGAATATAAAAATGCAAATTTTTGTTAAAACTCTTACTGGCAAAACT 86240 Query 106296 ATTACCGTGGAAACAGAACCCGGCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGAC 106355 ||||| ||||| || || ||| || ||| | || || |||||| || Sbjct 86241 ATTACTTTGGAAGTTGAGCCTTCCGACACTATTGAAAATGTCAAGGCCAAAATTCAGGAT 86300 Query 106356 AAAGAAGGCGTGCCCGTTGATCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGAT 106415 ||||||||| | || ||||||||| | | |||| || || |||||||| |||||| Sbjct 86301 AAAGAAGGCATTCCTCCAGATCAACAACGTTTGATTTTCGCTGGTAAACAATTGGAAGAT 86360 Query 106416 TCTAAAACTATGGGCGATTACAACATACAAAAAGAATCTACACTACATTTAGTA 106469 ||| | ||||| ||||||||||| || || || | || || ||| Sbjct 86361 GGGCGGACTTTATCGGATTATAACATACAAAAGGAGTCGACCTTGCACTTGGTA 86414 >seq343 Length=430003 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 |||||||| |||||||| || ||||| || || ||||| || ||||| |||| | Sbjct 48619 ATGCAAATATTTGTTAAGACTTTGACCGGTAAAACCATCACTTTGGAAGTAGAATCGTCG 48560 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| || | | | || ||| |||||| ||||| ||||| | || || ||| Sbjct 48559 GATACTATCGAAAACGTTAAAGCAAAAATCCAAGACAAGGAAGGTATTCCTCCAGACCAA 48500 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 || | | || | ||| || ||||| || ||||| || || ||||||||| Sbjct 48499 CAGCGTTTGATCTTTGCTGGAAAACAGTTGGAAGACGGCCGCACGTTGTCTGATTACAAC 48440 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTG 106472 ||||| |||||||| ||| ||||||| |||||| Sbjct 48439 ATACAGAAAGAATCCACATTACATTTGGTATTG 48407 Score = 87.8 bits (96), Expect = 1e-12 Identities = 153/221 (69%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 106253 TTTAAAAATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGA 106312 ||| |||||||| || || || || ||||||||||| || || || ||| |||| || Sbjct 48854 TTTTAAAATGCAGATATTCGTGAAGACATTGACTGGAAAAACTATCACCTTGGAGGTTGA 48795 Query 106313 ACCCGGCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGT 106372 || |||| || ||| | || ||| |||||| || ||||| || || || Sbjct 48794 GCCATCCGATACTATTGAGAATGTTAAAACTAAAATTCAAGATAAAGAGGGTGTCCCACC 48735 Query 106373 TGATCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGAT--TCTAAAACTATGGGC 106430 ||||||||| | | || | ||| |||||||| || ||| || | | ||| | Sbjct 48734 AGATCAACAACGTTTGATCTTTGCTGGCAAACAGTTGGAAAATGGCCGCACACTCT--CT 48677 Query 106431 GATTACAACATACAAAAAGAATCTACACTACATTTAGTATT 106471 || |||||||| || |||||||| ||||| ||||| || || Sbjct 48676 GACTACAACATTCAGAAAGAATCGACACTCCATTTGGTTTT 48636 Score = 84.2 bits (92), Expect = 2e-11 Identities = 130/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318 ||||||||| ||||||||||| |||||||| || ||||| || ||||| |||||| Sbjct 48392 AATGCAAATATTTGTTAAAACTTTGACTGGAAAAACCATCACTTTGGAAGTAGAACCGTC 48333 Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378 ||| || | | | || ||| |||||| ||||| ||||| | || || || Sbjct 48332 GGATACTATCGAAAACGTTAAAGCAAAAATCCAAGACAAGGAAGGTATTCCTCCAGACCA 48273 Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAA 106438 ||| | | |||| || ||||||||||| |||||| || || |||||||| Sbjct 48272 ACAGCGTTTAATTTTCGCTGGCAAACAATTGGAAGATGGCCGCACATTGTCTGATTACAA 48213 Query 106439 CATACA 106444 |||||| Sbjct 48212 CATACA 48207 >seq394 Length=301216 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| || ||||| ||||| ||||| || || ||||| || | ||| ||||||| Sbjct 217246 ATGCAGATCTTTGTAAAAACTTTGACAGGTAAAACCATCACTTTAGAAGTAGAACCCTCG 217187 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| || ||| | || ||| ||||||| |||||||||||| | || |||||| Sbjct 217186 GATACTATTGAGAACGTTAAAGCAAAAATTCAAGACAAAGAAGGCATTCCTCCAGATCAA 217127 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 || | | |||| ||| || || || | |||||| || || || || || Sbjct 217126 CAGCGCTTAATTTTTGCCGGTAAGCAGCTGGAAGATGGCCGCACCTTGTCAGACTATAAT 217067 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATT 106471 || ||||| |||||||| || ||||| || || Sbjct 217066 ATCCAAAAGGAATCTACGCTCCATTTGGTGTT 217035 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 402310349283008