Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020 15-01-15] 3,926 sequences; 380,104,241 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq343 141 8e-29 seq394 129 5e-25 >seq343 Length=430003 Score = 141 bits (156), Expect = 8e-29 Identities = 171/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 ||||||| || | | ||| ||||||||||| || || || || ||||||||||| | Sbjct 48391 TTCCACCGCGGAGACGCAATACCAAATGTAATGTGGATTCTTTCTGTATGTTGTAATCAG 48450 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 ||| || || |||| |||| ||| || || ||||| ||||| ||||| ||||| | || Sbjct 48451 ACAACGTGCGGCCGTCTTCCAACTGTTTTCCAGCAAAGATCAAACGCTGTTGGTCTGGAG 48510 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAG-TTGCCACCGTGTCGCTCGATTCC 35686 ||| | |||||||| ||| |||||||| | | || | | || || |||||| Sbjct 48511 GAATACCTTCCTTGTCTTGGAT-TTTTGCTTTAACGTTTTCGATAGTATCCGACGATTCT 48569 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || |||| ||||| |||||||| |||||||| || |||||||| ||||| Sbjct 48570 ACTTCCAAAGTGATGGTTTTACCGGTCAAAGTCTTAACAAATATTTGCAT 48619 Score = 102 bits (112), Expect = 7e-17 Identities = 137/188 (73%), Gaps = 2/188 (1%) Strand=Plus/Plus Query 35552 TGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAAC 35611 || ||||||||||| | ||| || || | || |||| || || || || || || || Sbjct 48207 TGTATGTTGTAATCAGACAATGTGCGGCCATCTTCCAATTGTTTGCCAGCGAAAATTAAA 48266 Query 35612 CGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCC-AC 35670 ||||| ||||| | ||||| | |||||||| ||| |||||||| | ||| | | Sbjct 48267 CGCTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGGAT-TTTTGCTTTAACGTTTTCGAT 48325 Query 35671 CGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATAT 35730 || || || ||| || |||| ||||| ||||| || ||||||||||| |||||||| Sbjct 48326 AGTATCCGACGGTTCTACTTCCAAAGTGATGGTTTTTCCAGTCAAAGTTTTAACAAATAT 48385 Query 35731 CTGCATTC 35738 ||||||| Sbjct 48386 TTGCATTC 48393 >seq394 Length=301216 Score = 129 bits (142), Expect = 5e-25 Identities = 158/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 35525 AACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCG 35584 ||||||||||| | |||| |||||||| || || || || | |||||| || | || Sbjct 217035 AACACCAAATGGAGCGTAGATTCCTTTTGGATATTATAGTCTGACAAGGTGCGGCCATCT 217094 Query 35585 TCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCC 35644 |||||||||||||| ||||| || || ||||| || || | ||||| || || |||| | Sbjct 217095 TCCAGCTGCTTACCGGCAAAAATTAAGCGCTGTTGATCTGGAGGAATGCCTTCTTTGT-C 217153 Query 35645 ATGATCTTTTGCTTCAGAGTT-GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGT 35703 ||| |||||||| | ||| | | || || | ||| || || | ||||| || Sbjct 217154 TTGAATTTTTGCTTTAACGTTCTCAATAGTATCCGAGGGTTCTACTTCTAAAGTGATGGT 217213 Query 35704 TTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||||| ||||||||||| ||||| |||||||| Sbjct 217214 TTTACCTGTCAAAGTTTTTACAAAGATCTGCAT 217246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450771477304080