Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020 15-01-15] 3,926 sequences; 380,104,241 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq158 239 4e-58 seq613 123 2e-23 >seq158 Length=613782 Score = 239 bits (264), Expect = 4e-58 Identities = 490/720 (68%), Gaps = 20/720 (3%) Strand=Plus/Minus Query 43757 GCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTGCA 43816 || || |||||||| |||||||||||||| | ||||||| | | |||||| | Sbjct 556271 GCCTCTTTTTGGACTGCAGAAGAAGTTGACCTCTCTAAAGATATCGACGATTGGAATCGG 556212 Query 43817 TTAA--AACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCG 43874 |||| || | ||| |||||||| || |||||||| |||||||| || || Sbjct 556211 TTAAGTAATGGC--GAACGTCATTTTATTTCACACGTTTTGGCTTTTTTTGCGGCATCCG 556154 Query 43875 ACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAG 43934 | || || || ||||| ||||| || || ||| | ||||| |||||| || | |||| Sbjct 556153 ATGGTATTGTTAATGAGAATTTAGTGGAACGATTTTCCCAAGAGGTTCAAATAACCGAAG 556094 Query 43935 CACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTC 43994 |||| || ||||||||||||||||||||||| |||||| | || ||||||||||| ||| Sbjct 556093 CACGTTGCTTTTATGGGTTTCAAATTGCCATGGAAAATGTACACTCGGAAATGTATAGTT 556034 Query 43995 TTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAG 44054 | || || || || || |||| ||||| | | || ||| | | |||||||| || | Sbjct 556033 TACTTATCGAAACATATATCAGAGATGAGAAAGAAAAGGAATATCTATTTAATGCCATTG 555974 Query 44055 AAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAAT- 44113 | ||| | || | |||| | || || || ||||| || |||||| || || Sbjct 555973 AGACAATGCCATTGGTTAAGAAGAAGGCGGAATGGGCACTAGCTTGGATATCATCGCATT 555914 Query 44114 --GATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAG 44171 | | ||| || ||||| || | || || || | || ||||| || |||||| | Sbjct 555913 CGGCTAATTTCGGTGAACGTGTTATAGCTTTCGCTGCCGTCGAAGGTATATTCTTTAGTG 555854 Query 44172 GATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTT 44231 | || || | ||||||||| |||||||||| || | ||||| || || ||||| | Sbjct 555853 GGAGCTTCGCTTCGATATTTTGGCTAAAGAAACGTGGAATAATGCCAGGTTTAACGTTCT 555794 Query 44232 CAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTACTTG 44291 | ||||| | ||| || ||||||||||| || || || ||||| || | || Sbjct 555793 CTAATGAAATGATATCACGCGATGAAGGCTTGCACTGTGAATTTGCGGTATTAATGTTTA 555734 Query 44292 GATATCTAGGAGACGATAAGCCTTCATGTAAGA--CAATTACAGATATTGTTGTAGAGGC 44349 | || | || || | || | || |||| ||| || || | ||| || Sbjct 555733 AACATTT--GATACAAAAACCGAGCA---AAGAACGGATTTTGGAAATAATAACAGATGC 555679 Query 44350 AGTAAAGATAGAACAAGAATTTATGACAACAGCATTACCTGTAAATTTAATAGGAATGAA 44409 || || || ||| |||| ||| ||||| || ||||| || | ||||| || ||||| Sbjct 555678 CGTTAAAATTGAAAAAGAGTTTTTGACAGAGGCCTTACCAGTCGACTTAATTGGCATGAA 555619 Query 44410 ---TGAACTTTTGATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAACT 44466 ||| | || || | ||||||| ||||| |||| |||||||| || || ||||| Sbjct 555618 CAGCGAAAGTATG-TGTA--AATATATAGAATATGTTGCCGATCGTTTGCTATTAGAACT 555562 >seq613 Length=257901 Score = 123 bits (136), Expect = 2e-23 Identities = 226/330 (68%), Gaps = 6/330 (2%) Strand=Plus/Plus Query 19612 GGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTTAACCAACTG 19671 ||||| || |||||||| || |||||| | || | ||| | ||||| || | ||| || Sbjct 18424 GGAGTCCACGACACTGTAGTTAATCAATTGTTGGCTAAAATCGACGGAGTGGAGCAATTG 18483 Query 19672 AATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGCGCCTTATTA 19731 |||||||||||||||||||| ||||| ||| | | || | || || || ||| || Sbjct 18484 AATAATATTTTAGTTATTGGTATGACCAATCGCCGTGACATGATTGATGAGGCTTTACTA 18543 Query 19732 CGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAATGTGGACGTGTG 19791 || || || || |||||| | | || ||||| | || || | ||| |||| | || Sbjct 18544 CGCCCTGGCCGTTTGGAAGTGCAAATGGAAATCAGTTTGCCTAACGAAGTTGGAAGAGTA 18603 Query 19792 GAAATTTTAAACATACATACATCAACCATGCGACA---AAATAACCTTTTAAATGACGAT 19848 ||||| |||| || || || | ||||| | ||||| || || ||| Sbjct 18604 CAAATTCTAAATATTCACACGAAACGTATGCGCGATTTTAATAAAATT---GCTGGAGAT 18660 Query 19849 GTAGATCTAGAAGAAATTGCAGCGGCTACCAAAAACTATAGCGGCGCAGAACTTGAGGGA 19908 || ||| ||||||| || || ||||||||| | |||||||| ||| | || || Sbjct 18661 GTGGATACGAAAGAAATCGCTGCCCTTACCAAAAATTTCAGCGGCGCTGAATTGGAAGGC 18720 Query 19909 TTAGTGAGGGCCGCCCAATCAATTGCAATG 19938 ||||| | || |||||||| | ||| ||| Sbjct 18721 TTAGTACGTGCTGCCCAATCTACTGCTATG 18750 Score = 95.1 bits (104), Expect = 1e-14 Identities = 195/287 (68%), Gaps = 6/287 (2%) Strand=Plus/Plus Query 19243 ATTGGAGGATTGAGTAAAGAGTTTTCTGAAATCTTTCGTAGAGCATTTGTGTCGCGTGTT 19302 || || || ||| |||||| || || || || ||| | || |||| || | || Sbjct 17993 ATCGGCGGCTTGGATAAAGAATTCAATGCTATTTTCCGTCGTGCTTTTGCCTCAAGAGTC 18052 Query 19303 TTTTCTGCAGATGTCATTAAACAATTGGGATGTAAACATGTTCGTGGACTTTTGCTTTAT 19362 ||| || | || || || |||| |||| || |||||||| || ||||| | ||| Sbjct 18053 TTTCCTCCCGAAGTGGTTGAACAGCTGGGTTGCAAACATGTCAAAGGTATTTTGTTGTAT 18112 Query 19363 GGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACTTAGTAAATTACTTACAAAA 19422 || || || ||| || ||||| ||||| || | || | | || || | || Sbjct 18113 GGACCTCCTGGTACCGGCAAAACCTTAATGGCTCGCCAAATAGGCAA--TATGTTGAATG 18170 Query 19423 CAACCT---CCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCG 19479 | | | || ||||||||||||||||| || | ||| |||||||||| || |||| Sbjct 18171 CC-CGTGAGCCGAAAATTGTAAATGGTCCGCAAGTATTAGATAAATATGTCGGCGAATCC 18229 Query 19480 GAAGAAAATGTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAA 19526 |||| ||| || |||| |||||||| || ||||| ||||| |||| Sbjct 18230 GAAGCTAATATAAGACGGTTGTTTGCCGAAGCTGAGGAAGAGGAAAA 18276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397436982475630