Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020 15-01-15] 3,926 sequences; 380,104,241 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq711 86.0 8e-12 seq264 82.4 1e-10 seq53 82.4 1e-10 >seq711 Length=206765 Score = 86.0 bits (94), Expect = 8e-12 Identities = 215/321 (67%), Gaps = 12/321 (4%) Strand=Plus/Plus Query 11500 ATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTG---TCAAAGCCATCCATCTCGGT 11556 |||||| || ||||| || | ||||| | ||||| |||||||||||||| || Sbjct 13084 ATTAGTAGCAGCAATGACAATAATGC---TTTCATTTCCTTCAAAGCCATCCATTTCAAC 13140 Query 11557 GAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCA--CCAGCACTG 11614 | | |||||| | |||||| ||||| ||||||| | || | | | | ||||| | Sbjct 13141 TAACATTTGATTTAATGTTTGCTCTCTTTCATCATGTCCT--CCTCCTAATCCAGCTCCT 13198 Query 11615 CGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGG 11674 | ||| || || || ||||| ||||| ||||| | |||||||||| | | | | Sbjct 13199 CTTTGACGTCCTACTGCGTCAATTTCATCGATGAATATAATACATGGTGCAGTCTTTTTG 13258 Query 11675 GCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAG 11734 || |||||| | ||| | || || ||||| || || |||||||| || || || Sbjct 13259 GCTTGTTCAAACATATCTCTCACTCTAGAAGCACCGACTCCTACAAACATTTCTACGAAA 13318 Query 11735 TTTGCGGCAGAGCACTG-GATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAG 11793 | || | || | || | ||||| || |||| ||| || || |||||| || | Sbjct 13319 TCTGATCCTGA-AATTGTAAAAAATGGAACTTTTGCTTCTCCTGCAATGGCTTTTGCTAA 13377 Query 11794 GAGGGTCTTTCCCGTACCTGG 11814 || || ||||| || || || Sbjct 13378 AAGTGTTTTTCCTGTTCCGGG 13398 >seq264 Length=379807 Score = 82.4 bits (90), Expect = 1e-10 Identities = 159/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 11623 GCCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTC 11682 ||| ||||| || || |||||||| |||| |||||| || ||||| ||||| | | | Sbjct 373639 GCCTACCGCGTCTATTTCATCAATAAAGAGAATACAAGGAGCATTTTTACGGGCCAATGC 373698 Query 11683 AAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGC 11742 ||| | ||| || || || || |||||| ||||||||||| || | || | | | Sbjct 373699 AAACATATCACGCACTCTCGAGGGACCCACGCCAACAAACATTTCTAAGAATTCGGAACC 373758 Query 11743 AGAG-CACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCT 11801 |||| || | ||| || || ||||| | ||| || || | || || || ||||| | Sbjct 373759 AGAGACAGT-GATAAAAGGCACATTAGCTTCTCCTGCAGTCGCCTTTGCAAGTAGGGTTT 373817 Query 11802 TTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACC 11853 | || || ||||| ||| | | | || ||| ||| ||||| ||||| Sbjct 373818 TGCCAGTCCCTGGGGGACCAGTTAACATTGCACCTTTGGGTATCTTTGCACC 373869 >seq53 Length=951126 Score = 82.4 bits (90), Expect = 1e-10 Identities = 159/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 11623 GCCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTC 11682 ||| ||||| || || |||||||| |||| |||||| || ||||| ||||| | | | Sbjct 694 GCCTACCGCGTCTATTTCATCAATAAAGAGAATACAAGGAGCATTTTTACGGGCCAATGC 753 Query 11683 AAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGC 11742 ||| | ||| || || || || |||||| ||||||||||| || | || | | | Sbjct 754 AAACATATCACGCACTCTCGAGGGACCCACGCCAACAAACATTTCTAAGAATTCGGAACC 813 Query 11743 AGAG-CACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCT 11801 |||| || | ||| || || ||||| | ||| || || | || || || ||||| | Sbjct 814 AGAGACAGT-GATAAAAGGCACATTAGCTTCTCCTGCAGTCGCCTTTGCAAGTAGGGTTT 872 Query 11802 TTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACC 11853 | || || ||||| ||| | | | || ||| ||| ||||| ||||| Sbjct 873 TGCCAGTCCCTGGGGGACCAGTTAACATTGCACCTTTGGGTATCTTTGCACC 924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628001179329600