Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020 15-01-15] 3,926 sequences; 380,104,241 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq362 89.7 6e-13 >seq362 Length=381446 Score = 89.7 bits (98), Expect = 6e-13 Identities = 473/750 (63%), Gaps = 8/750 (1%) Strand=Plus/Plus Query 104692 GTGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGG 104750 |||| || ||| | || | ||||| ||||| || ||||| |||||||| ||||| |||| Sbjct 8196 GTGCACGGGATTTATTTTATGCTCTGTGGATACCGGATCTTTTCATGAAAAGAGTAGAGG 8255 Query 104751 AGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGG 104810 || |||||||||| | ||||| | || ||||| | | || | Sbjct 8256 CTGATGAGCATTGGTCTCTAATGTGTCCCCATAAATGCCCTGGCTTGTGTGAAATTTATG 8315 Query 104811 GTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACGG 104870 | || | ||||| | |||| ||| ||||| || || || |||| | || Sbjct 8316 GAGATAAATTTGATAAATTATACATAAAATACGAAGACGAGGGCAAAGCGAATAAAACAA 8375 Query 104871 TGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCAT 104930 | |||| ||| | ||| || || || ||||| ||||| || || || | Sbjct 8376 TAAAAGCTCGTGATTTATGGTTCGCAATATGCAGTGCTCAAGTAGAGACCGGGACTCCTT 8435 Query 104931 ACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCA 104990 |||||||||||||||| || ||||| | || ||||||||| ||||| | || || | Sbjct 8436 ACATGCTTTACAAAGATGCTTGTAATCGTAAAAGTAATCAACAGAATGTTGGCACTATAA 8495 Query 104991 AGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGT 105050 | | || | |||||||||||| | |||| |||| || || | || || | Sbjct 8496 AATGCAGTAACTTGTGTACAGAAATCGTCGAATATACATCAGCTGAAGAAATAGCAGTTT 8555 Query 105051 GTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATT 105110 | || || || ||||| || | | || ||| ||| ||| ||| | || ||||| Sbjct 8556 GCAATCTAGCCTCAATTGCGTTGAATATGTTCGTG--ACCACAGATAAACA-ATATGATT 8612 Query 105111 ATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATA 105170 | | |||||| | |||||| | || | | || | |||||| |||| | || ||| Sbjct 8613 TTCACAAACTCAAAGAAGTTGCCAAGCTTATAACAAGAAACCTCAACAAGATAATCGATG 8672 Query 105171 GAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTC 105230 |||| || || | | | | || |||||| | | || |||||||||||| Sbjct 8673 TCAATTACTATCCGCTGTCGGAAACCAGAAAGTCTAATTTTCGTCATCGTCCAATTGGTT 8732 Query 105231 TCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCGACG 105290 | ||||| || || | || || | | | ||| | || | | | ||| ||| Sbjct 8733 TAGGTGTCCAAGGATTTGCTGACGCACTAATTTTAATGCGTTATCCCTATGAAAGCGA-- 8790 Query 105291 AAGCGAAGGA--AATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAGGC 105348 ||| | | | | ||| | || ||||| || || ||| | | || | || || Sbjct 8791 AAGTGCTGCACGCTTAAATAAACAAATTTTTGAAACAATATATTATGGTGCCTTAGAAGC 8850 Query 105349 GAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTC 105408 |||| || ||||| | | ||||| || ||||||| ||| ||| ||||| | Sbjct 8851 TAGTTGTGAATTGGCCAAACAGTACGGTCCGTACGAAACCTATGAAGGTAGTCCAGTTAG 8910 Query 105409 ACAAGGGGTGCTTCAATTTGATATGTGGGA 105438 |||| | ||||||| |||||||||||| Sbjct 8911 TAAAGGTATCCTTCAATATGATATGTGGGA 8940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583232176476240