Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020 15-01-15] 3,926 sequences; 380,104,241 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq961 96.9 4e-15 seq362 96.9 4e-15 >seq961 Length=34630 Score = 96.9 bits (106), Expect = 4e-15 Identities = 186/269 (69%), Gaps = 4/269 (1%) Strand=Plus/Minus Query 53489 GATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGT 53548 ||||| | || |||||| | || | |||||||| ||||| || ||| |||| ||| Sbjct 4701 GATGGCCTTGTTCCTATGTTGCGTCTGTTCAACAATGTTGCCCGTTATGTCGACCAAGGT 4642 Query 53549 GGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATG 53608 ||||| || || |||| | || || || ||| | ||||| ||||| || || || | Sbjct 4641 GGTGGAAAACGTCCGGGGGCTTTTGCTATATACTTAGAGCCTTGGCATGCAGATATATTC 4582 Query 53609 GAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGA-GATGCGCTGC-CGTGACCTGT 53666 || |||||| | || |||| |||| | ||||| ||| || ||| || || | | Sbjct 4581 GAATTTCTCAATTTGAAAAAGAATACGGGTAAAGAAGAAGAT-CG-TGCACGGGATTTAT 4524 Query 53667 TTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGT 53726 || ||||||||||| ||||| || |||||| ||| || ||| || ||| | |||| Sbjct 4523 TTTATGCTCTGTGGATACCGGATCTTTTCATGAAAAGAGTAGAGGCTGATGAGCATTGGT 4464 Query 53727 ACCTGATGTGCCCGAACGAGTGCCCCGGC 53755 || ||||| || | | ||||| ||| Sbjct 4463 CTCTAATGTGTCCCCATAAATGCCCTGGC 4435 >seq362 Length=381446 Score = 96.9 bits (106), Expect = 4e-15 Identities = 186/269 (69%), Gaps = 4/269 (1%) Strand=Plus/Plus Query 53489 GATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGT 53548 ||||| | || |||||| | || | |||||||| ||||| || ||| |||| ||| Sbjct 8033 GATGGCCTTGTTCCTATGTTGCGTCTGTTCAACAATGTTGCCCGTTATGTCGACCAAGGT 8092 Query 53549 GGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATG 53608 ||||| || || |||| | || || || ||| | ||||| ||||| || || || | Sbjct 8093 GGTGGAAAACGTCCGGGGGCTTTTGCTATATACTTAGAGCCTTGGCATGCAGATATATTC 8152 Query 53609 GAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGA-GATGCGCTGC-CGTGACCTGT 53666 || |||||| | || |||| |||| | ||||| ||| || ||| || || | | Sbjct 8153 GAATTTCTCAATTTGAAAAAGAATACGGGTAAAGAAGAAGAT-CG-TGCACGGGATTTAT 8210 Query 53667 TTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGT 53726 || ||||||||||| ||||| || |||||| ||| || ||| || ||| | |||| Sbjct 8211 TTTATGCTCTGTGGATACCGGATCTTTTCATGAAAAGAGTAGAGGCTGATGAGCATTGGT 8270 Query 53727 ACCTGATGTGCCCGAACGAGTGCCCCGGC 53755 || ||||| || | | ||||| ||| Sbjct 8271 CTCTAATGTGTCCCCATAAATGCCCTGGC 8299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547189145374800