Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020 15-01-15] 3,926 sequences; 380,104,241 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq394 141 6e-29 seq343 123 2e-23 seq180 93.3 3e-14 seq110 93.3 3e-14 >seq394 Length=301216 Score = 141 bits (156), Expect = 6e-29 Identities = 171/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || | |||||| |||||||||||||| || |||||||| || ||||| ||||| Sbjct 217019 GCCTCCGCGAAGACGTAACACCAAATGGAGCGTAGATTCCTTTTGGATATTATAGTCTGA 217078 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 | || || | ||||| || || ||||||||||| ||||| |||||||| || || || Sbjct 217079 CAAGGTGCGGCCATCTTCCAGCTGCTTACCGGCAAAAATTAAGCGCTGTTGATCTGGAGG 217138 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | || || |||||| ||| ||||| ||||||| | ||| || || | || | Sbjct 217139 AATGCCTTCTTTGTCT-TGAATTTTTGCTTTAACGTTCTCAATAGTATCCGAGGGTTCTA 217197 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 |||| | || || |||||||| || || ||||| ||||| ||||||||| Sbjct 217198 CTTCTAAAGTGATGGTTTTACCTGTCAAAGTTTTTACAAAGATCTGCATG 217247 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 || ||||| | ||| ||| || || ||||||||||| ||||| || || | || || Sbjct 217266 ACTAAATGCAAAGTTGACTCTTTCTGTATGTTATAATCCGAAAGAGTACGGCCATCCTCC 217325 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 | ||| || || ||||| ||||||||||| || || ||||| | ||| ||||| ||| || Sbjct 217326 AATTGCTTTCCAGCAAAAATTAAACGCTGCTGATCTGGCGGGATTCCTTCCTTATCT-TG 217384 Query 34618 ATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTT 34676 | ||| | || || | ||| ||||| ||| || || | || || ||||| Sbjct 217385 AATTTTAGCCTTGACATTCTCAATAGTGTCAGACGGCTCAACCTCTAAAGTGATAGTTTT 217444 Query 34677 ACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 || || || || ||||| || |||||||| || Sbjct 217445 GCCAGTCAATGTCTTCACGAAGATCTGCATTTT 217477 >seq343 Length=430003 Score = 123 bits (136), Expect = 2e-23 Identities = 163/221 (74%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 |||||||| |||||||| | ||| || || || ||||| ||||| || | || || Sbjct 48402 AGACGCAATACCAAATGTAATGTGGATTCTTTCTGTATGTTGTAATCAGACAACGTGCGG 48461 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 ||||||| | ||||| || ||||| || |||||||||||||| || || | || ||| Sbjct 48462 CCGTCTTCCAACTGTTTTCCAGCAAAGATCAAACGCTGTTGGTCTGGAGGAATACCTTCC 48521 Query 34609 TTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGT-CTTCGCTCTCCACTTCCACGG 34666 |||||| ||| ||||| ||||||| | || || | | || | || ||||||| | Sbjct 48522 TTGTCTTGGAT-TTTTGCTTTAACGTTTTCGATAGTATCCGACGAT-TCTACTTCCAAAG 48579 Query 34667 TTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 | || ||||||||||| || || || ||||| || |||||| Sbjct 48580 TGATGGTTTTACCGGTCAAAGTCTTAACAAATATTTGCATG 48620 Score = 105 bits (116), Expect = 4e-18 Identities = 111/145 (77%), Gaps = 1/145 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| ||||| || ||||| |||||||| ||||| ||||| || | ||| || Sbjct 45696 AGACGCAGTACCAAGTGAAGAGTAGATTCCTTTTGTATGTTGTAATCAGACAATGTGCGG 45755 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| | |||||| || || || |||||||||||||| || || || | || ||| Sbjct 45756 CCATCTTCCAATTGTTTGCCAGCGAAAATTAAACGCTGTTGATCTGGAGGAATACCTTCC 45815 Query 34609 TTGTCTGTGATCTTTTGTTTTAACG 34633 |||||| ||| ||||| ||||||| Sbjct 45816 TTGTCTTGGAT-TTTTGCTTTAACG 45839 Score = 105 bits (116), Expect = 4e-18 Identities = 157/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 34491 ACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTC 34550 ||| || ||||||||||| || || || |||||||| || || || ||||| || | Sbjct 48632 ACGTAAAACCAAATGGAGTGTCGATTCTTTCTGAATGTTGTAGTCAGAGAGTGTGCGGCC 48691 Query 34551 GTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTT 34610 | ||| | ||||| || ||||| || ||||| ||||| || || || || ||||| || Sbjct 48692 ATTTTCCAACTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGTGGGACACCCTCTTT 48751 Query 34611 GTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTA 34669 ||| ||| ||| |||||||| | ||| || || ||| || |||| ||| | Sbjct 48752 ATCT-TGAATTTTAGTTTTAACATTCTCAATAGTATCGGATGGCTCAACCTCCAAGGTGA 48810 Query 34670 TCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 | ||||| || || || || ||||| || |||||||| || Sbjct 48811 TAGTTTTTCCAGTCAATGTCTTCACGAATATCTGCATTTT 48850 Score = 102 bits (112), Expect = 5e-17 Identities = 138/187 (74%), Gaps = 4/187 (2%) Strand=Plus/Plus Query 34522 TGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAA 34581 || ||||| ||||| || | ||| || | ||||| | |||||| || || || |||||| Sbjct 48207 TGTATGTTGTAATCAGACAATGTGCGGCCATCTTCCAATTGTTTGCCAGCGAAAATTAAA 48266 Query 34582 CGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-ATAAAAT 34640 ||||||||||| || || | || ||||||||| ||| ||||| ||||||| | || Sbjct 48267 CGCTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGGAT-TTTTGCTTTAACGTTTTCGAT 48325 Query 34641 TGTGT-CTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAA 34699 || | | || | || ||||||| || || ||||| || || || ||||| ||||| | Sbjct 48326 AGTATCCGACGGT-TCTACTTCCAAAGTGATGGTTTTTCCAGTCAAAGTTTTAACAAATA 48384 Query 34700 TCTGCAT 34706 | ||||| Sbjct 48385 TTTGCAT 48391 >seq180 Length=539930 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| | ||||||||| | ||| | ||| || |||||||| |||||||| || Sbjct 121376 CCACCTCGCAAACGCAACACAAGATGTAATGTGGATTCTTTTTGAATATTATAATCGGAC 121435 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | ||| || | ||||| | ||| || || || || || || || || ||||| || || Sbjct 121436 AATGTGCGACCATCTTCCAATTGCTTTCCAGCGAAAATCAATCGTTGCTGGTCGGGTGGA 121495 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACT 34659 | |||||| ||||| ||||| ||||| | || ||||| | || || Sbjct 121496 ATTCCCTCTTTGTCCTGAATCTTGGCTTTTACATTTTCGATAGTGTCCGAGGGTTCGACC 121555 Query 34660 TCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 || | || || || || || |||| ||||| |||||||||||||| ||| Sbjct 121556 TCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCATATTG 121606 >seq110 Length=875010 Score = 93.3 bits (102), Expect = 3e-14 Identities = 157/225 (70%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||| || | || ||||||||| ||||||||||| || | || ||| Sbjct 86422 AGACGAAGTACCAAGTGCAAGGTCGACTCCTTTTGTATGTTATAATCCGATAAAGTCCGC 86363 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| | ||||||||| || || || ||||| ||||| || || || | || || Sbjct 86362 CCATCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCT 86303 Query 34609 TTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 || || ||| ||| | || || | ||| ||||| ||| ||||||| || Sbjct 86302 TTATC-CTGAATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCTCAACTTCCAAAGT 86244 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGAT 34712 || ||||| || || | ||||| |||||||| ||||| || || Sbjct 86243 AATAGTTTTGCCAGTAAGAGTTTTAACAAAAATTTGCATTTTTAT 86199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314714540778758