Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020 15-01-15] 3,926 sequences; 380,104,241 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq110 185 8e-42 seq180 167 2e-36 seq394 163 2e-35 seq343 159 3e-34 seq539 114 1e-20 seq502 100 2e-16 >seq110 Length=875010 Score = 185 bits (204), Expect = 8e-42 Identities = 180/232 (78%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| |||||||| || ||||| |||||||| | ||||| || || ||| Sbjct 86205 ATGCAAATTTTTGTTAAAACTCTTACTGGCAAAACTATTACTTTGGAAGTTGAGCCTTCC 86264 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | ||||| |||||||| || ||||||||||| || || |||||| Sbjct 86265 GACACTATTGAAAATGTCAAGGCCAAAATTCAGGATAAAGAAGGCATTCCTCCAGATCAA 86324 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| || | ||| || |||||||||||||| | ||| | || ||||| ||| Sbjct 86325 CAACGTTTGATTTTCGCTGGTAAACAATTGGAAGATGGGCGGACTTTATCGGATTATAAC 86384 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCATAA 27219 || ||||||||||||||||| || ||||| | ||| | || ||||| |||| Sbjct 86385 ATACAAAAGGAGTCGACCTTGCACTTGGTACTTCGTCTCCGTGGTGGTATAA 86436 >seq180 Length=539930 Score = 167 bits (184), Expect = 2e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||||||||| || || |||||| | || |||||||| || ||||| || Sbjct 121602 ATGCAGATTTTTGTAAAAACCCTAACGGGCAAGACCATCACTCTTGAGGTCGAACCCTCG 121543 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || ||| || ||||| |||||||| || || |||||||| || Sbjct 121542 GACACTATCGAAAATGTAAAAGCCAAGATTCAGGACAAAGAGGGAATTCCACCCGACCAG 121483 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || || || || | ||| || || ||||||||||| || || | |||||||| || Sbjct 121482 CAACGATTGATTTTCGCTGGAAAGCAATTGGAAGATGGTCGCACATTGTCCGATTATAAT 121423 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 |||||||| || || || |||||| | || ||||||||||| ||||| Sbjct 121422 ATTCAAAAAGAATCCACATTACATCTTGTGTTGCGTTTGCGAGGTGG 121376 >seq394 Length=301216 Score = 163 bits (180), Expect = 2e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| |||||||||||| |||| || || | || ||| | ||||| ||||| || Sbjct 217247 CATGCAGATCTTTGTAAAAACTTTGACAGGTAAAACCATCACTTTAGAAGTAGAACCCTC 217188 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || | ||||||| || ||| |||||||||||||||||||||||| || || ||||| Sbjct 217187 GGATACTATTGAGAACGTTAAAGCAAAAATTCAAGACAAAGAAGGCATTCCTCCAGATCA 217128 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| ||||| | ||||| || || ||||||| | ||| | || || || || Sbjct 217127 ACAGCGCTTAATTTTTGCCGGTAAGCAGCTGGAAGATGGCCGCACCTTGTCAGACTATAA 217068 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCA 27216 || |||||||| || || | |||||||| || ||| | || || |||| Sbjct 217067 TATCCAAAAGGAATCTACGCTCCATTTGGTGTTACGTCTTCGCGGAGGCA 217018 Score = 145 bits (160), Expect = 7e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||| ||||| |||| ||| | || || || ||||| Sbjct 217474 ATGCAGATCTTCGTGAAGACATTGACTGGCAAAACTATCACTTTAGAGGTTGAGCCGTCT 217415 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| ||||| ||||||||||| || ||||| || || || ||||| Sbjct 217414 GACACTATTGAGAATGTCAAGGCTAAAATTCAAGATAAGGAAGGAATCCCGCCAGATCAG 217355 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||||||||| | || || || |||||||| || | || |||| ||||| ||| Sbjct 217354 CAGCGTTTAATTTTTGCTGGAAAGCAATTGGAGGATGGCCGTACTCTTTCGGATTATAAC 217295 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || ||||| || || ||||| || | |||||||| || ||||| Sbjct 217294 ATACAGAAAGAGTCAACTTTGCATTTAGTCCTACGTTTGCGTGGGGGCAT 217245 >seq343 Length=430003 Score = 159 bits (176), Expect = 3e-34 Identities = 176/232 (76%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| |||||||| || ||| ||||||| || | || ||| | ||||| ||| |||| Sbjct 48620 CATGCAAATATTTGTTAAGACTTTGACCGGTAAAACCATCACTTTGGAAGTAGAATCGTC 48561 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || | || || | || ||| |||||| |||||||| ||||| || || || || || Sbjct 48560 GGATACTATCGAAAACGTTAAAGCAAAAATCCAAGACAAGGAAGGTATTCCTCCAGACCA 48501 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTT-TCCGATTACA 27165 ||||||||| || | || || ||||| ||||||||| | || |||| || ||||||| Sbjct 48500 ACAGCGTTTGATCTTTGCTGGAAAACAGTTGGAAGACGGC-CGCACGTTGTCTGATTACA 48442 Query 27166 ACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||| || || || || || ||||||||||| |||||| | || ||||| || Sbjct 48441 ACATACAGAAAGAATCCACATTACATTTGGTATTGCGTCTCCGCGGTGGAAT 48390 Score = 158 bits (174), Expect = 1e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || |||||||| | || ||||| |||| ||| | ||||| |||||||| Sbjct 57703 ATGCAAATCTTCGTAAAAACATTAACTGGCAAAACTATCACTTTGGAAGTTGAACCGTCA 57644 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || ||| || ||||||||||||||||| || || || || || Sbjct 57643 GATACTATCGAAAATGTTAAAGCCAAGATTCAAGACAAAGAAGGTATTCCTCCAGACCAG 57584 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| || | |||||||| ||| |||||||| | ||| | |||||||| || Sbjct 57583 CAACGTTTGATTTTTGCCGGCAAGCAACTGGAAGACGGACGCACCTTGTCCGATTATAAT 57524 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| |||||||| ||||| |||||||| | ||| |||| ||||| || Sbjct 57523 ATTCAGAAGGAGTCAACCTTGCATTTGGTCCTACGTCTGCGCGGTGGTAT 57474 Score = 154 bits (170), Expect = 1e-32 Identities = 145/185 (78%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 27033 GAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGC 27092 ||||| || || |||||| | ||||||| ||||| ||||||||||| || ||||| Sbjct 54423 GAAGTCGAGCCTTCCGACACAATTGAGAATGTCAAGGCTAAAATTCAAGATAAGGAAGGA 54364 Query 27093 ATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACC 27152 || || || |||||||| ||||| || | |||||||||||| |||| ||| | ||| Sbjct 54363 ATCCCCCCAGATCAACAACGTTTGATTTTTGCCGGCAAACAACTGGAGGACGGACGCACC 54304 Query 27153 GTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGT 27212 | ||||||||||| ||||| |||||||| ||||| |||||||| | |||||||| ||| Sbjct 54303 TTGTCCGATTACAATATTCAGAAGGAGTCAACCTTGCATTTGGTCCTACGTTTGCGCGGT 54244 Query 27213 GGCAT 27217 || || Sbjct 54243 GGTAT 54239 Score = 149 bits (164), Expect = 5e-31 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||||||||| || || || |||| || || |||| || | || || || || ||| Sbjct 48847 ATGCAGATATTCGTGAAGACATTGACTGGAAAAACTATCACCTTGGAGGTTGAGCCATCC 48788 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| || ||| ||||||||||| ||||| || | ||||| |||||| Sbjct 48787 GATACTATTGAGAATGTTAAAACTAAAATTCAAGATAAAGAGGGTGTCCCACCAGATCAA 48728 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| || | || |||||||| |||||| | | || | || || |||||| Sbjct 48727 CAACGTTTGATCTTTGCTGGCAAACAGTTGGAAAATGGCCGCACACTCTCTGACTACAAC 48668 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| || || ||||| | ||||||||||| |||||||| |||||||| Sbjct 48667 ATTCAGAAAGAATCGACACTCCATTTGGTTTTACGTTTGCGTGGTGGCAT 48618 Score = 136 bits (150), Expect = 3e-27 Identities = 141/185 (76%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| |||||||| |||||| |||| || || | || ||| | ||||| |||||||| Sbjct 48391 ATGCAAATATTTGTTAAAACTTTGACTGGAAAAACCATCACTTTGGAAGTAGAACCGTCG 48332 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || ||| |||||| |||||||| ||||| || || || || ||| Sbjct 48331 GATACTATCGAAAACGTTAAAGCAAAAATCCAAGACAAGGAAGGTATTCCTCCAGACCAA 48272 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||||||||| | ||| ||||||||||||||||| | || | || ||||||||| Sbjct 48271 CAGCGTTTAATTTTCGCTGGCAAACAATTGGAAGATGGCCGCACATTGTCTGATTACAAC 48212 Query 27168 ATTCA 27172 || || Sbjct 48211 ATACA 48207 Score = 132 bits (146), Expect = 4e-26 Identities = 144/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 27024 ATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGAC 27083 || ||| | ||||| |||||||| || | || || | || ||| |||||| |||||| Sbjct 45877 ATCACTTTGGAAGTAGAACCGTCGGATACTATCGAAAACGTTAAAGCAAAAATCCAAGAC 45818 Query 27084 AAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGAC 27143 || ||||| || || || ||||||||||||||||| | ||| ||||||||||||||||| Sbjct 45817 AAGGAAGGTATTCCTCCAGATCAACAGCGTTTAATTTTCGCTGGCAAACAATTGGAAGAT 45758 Query 27144 AGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGT 27203 | || | || ||||||||||| |||||||| || || | || ||||| ||||| Sbjct 45757 GGCCGCACATTGTCTGATTACAACATACAAAAGGAATCTACTCTTCACTTGGTACTGCGT 45698 Query 27204 TTGCGGGGTGG 27214 | || || || Sbjct 45697 CTCCGCGGAGG 45687 >seq539 Length=405157 Score = 114 bits (126), Expect = 1e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| ||||| | || ||||| | ||||| | || || |||||| || Sbjct 240625 ATGCAGATTTTTGTGAAAACGTTAACGGGCAATACCCTTACTTTAGATGTCGAACCGACC 240566 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | | | ||| || ||||| || || || || || ||||| ||||| Sbjct 240565 GATACTATTGAAAAGATTAAAAGCAAGATTCAGGATAAGGACGGTATTCCACCAAATCAA 240506 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 | || || || || |||||||| || || ||||| |||| || | | | || ||| Sbjct 240505 CGCCGATTGATTTATGCCGGCAAGCAGTTAGAAGATAGTTGCACGCTAACGAACTATAAC 240446 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTT 27205 || ||||||| |||| | ||||||||||| ||||| Sbjct 240445 ATACAAAAGGGCGCGACTCTCCATTTGGTTTTACGTTT 240408 >seq502 Length=252103 Score = 100 bits (110), Expect = 2e-16 Identities = 229/341 (67%), Gaps = 4/341 (1%) Strand=Plus/Minus Query 135314 CGCGAATTGGCGGACAATTTTTGTTATTATAACAAACATTATGATTGCATAGAAGGTGCT 135373 || |||||||||||||||||||||| |||||| || |||||||| | ||||| Sbjct 236520 CGGGAATTGGCGGACAATTTTTGTTTTTATAATCAAAATTATGATAATTTTGAAGGCTTA 236461 Query 135374 CCGGCATGGGCGCAACAAACTTTGCACGCTCACGCCTCTGATCGCAGAGACTT--TTGTT 135431 | || ||| ||| ||||| | ||| || | | | || | || | ||| | Sbjct 236460 CAGGATTGGTCGCGTAAAACTCTAAACGAACAT-CGTAAGGACGT-GCGATCTCCTTGCT 236403 Query 135432 ACACGCGCGAGCAATGGGACCAAGCGTTGACGCATGACCCGTTGTGGAACGCGGCACAAC 135491 | | ||| ||| || || || || || || ||||||||| | || |||| Sbjct 236402 ATAGCTTGGAGGAATTCGAGCAGGCCCGTACCCACGATGACTTGTGGAACTCAGCTCAAC 236343 Query 135492 GGCAGCTTAAGCGAGAAGGCAAAATGCACGGATTTATGCGCATGTATTGGGCAAAAAAGA 135551 ||| | | |||||| || ||||||||||| ||| |||| ||||||||||| ||||||| Sbjct 236342 TGCAATTGATGCGAGAGGGTAAAATGCACGGTTTTTTGCGTATGTATTGGGCTAAAAAGA 236283 Query 135552 TATTGGAATGGTCTGCATCGCCTGCAGAGGCGCTACAACACGCAATATTTTTTAATGATT 135611 | || ||||||||| | || | ||| || | || | || |||| |||||| Sbjct 236282 TTTTAGAATGGTCTAAAAGCCCGGAAGACGCTTTGGAATTTTCTCTACTTTTAAATGATA 236223 Query 135612 ACTACAGTTTAGATGGACGCGATTCAAATGGCTACGTAGGT 135652 || ||||| |||||| ||| | || || || || ||| Sbjct 236222 GATATAGTTTGGATGGAACGGATCCCAACGGTTATGTCGGT 236182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434897056379520