Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020 15-01-15] 3,926 sequences; 380,104,241 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq343 118 8e-22 seq110 114 9e-21 seq180 109 4e-19 seq394 91.5 1e-13 >seq343 Length=430003 Score = 118 bits (130), Expect = 8e-22 Identities = 168/235 (71%), Gaps = 10/235 (4%) Strand=Plus/Minus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 ||||||||||| || || ||||| | ||||| ||| ||| || | || || ||| Sbjct 57706 AAAATGCAAATCTTCGTAAAAACATTAACTGGCAAAACTATCACTTTGGAAGTTGAA--- 57650 Query 27847 ACCGACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGA 27901 ||| | | ||| |||| || ||| || || |||||||||||| |||| Sbjct 57649 -CCGTC-AGATACTATCGAAAATGTTAAAGCCAAGATTCAAGACAAAGAAGGTATTCCTC 57592 Query 27902 TGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCG 27961 || |||||||| || ||||||||||| || ||| |||| |||| ||||| |||||||| Sbjct 57591 CAGACCAGCAACGTTTGATTTTTGCCGGCAAGCAACTGGAAGACGGACGCACCTTGTCCG 57532 Query 27962 ATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||| || || || || ||| || ||||||||||| | ||| |||| || || Sbjct 57531 ATTATAATATTCAGAAGGAGTCAACCTTGCATTTGGTCCTACGTCTGCGCGGTGG 57477 Score = 105 bits (116), Expect = 5e-18 Identities = 91/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || || ||||| || ||||||||||| |||||| |||| |||| ||||| |||||||||| Sbjct 54354 GATCAACAACGTTTGATTTTTGCCGGCAAACAACTGGAGGACGGACGCACCTTGTCCGAT 54295 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||| || || || ||| || ||||||||||| | |||||||| || || Sbjct 54294 TACAATATTCAGAAGGAGTCAACCTTGCATTTGGTCCTACGTTTGCGCGGTGG 54242 Score = 98.7 bits (108), Expect = 7e-16 Identities = 113/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 27865 GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTT 27924 || ||| |||||| ||||| |||||| |||| || || || || || || ||| Sbjct 48544 GTTAAAGCAAAAATCCAAGACAAGGAAGGTATTCCTCCAGACCAACAGCGTTTGATCTTT 48485 Query 27925 GCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGC 27984 || |||||||| ||||| |||| |||| ||||| ||||||||||| || ||||| | Sbjct 48484 GCTGGAAAACAGTTGGAAGACGGCCGCACGTTGTCTGATTACAACATACAGAAAGAATCC 48425 Query 27985 ACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 || || |||||||| |||||| | || || || Sbjct 48424 ACATTACATTTGGTATTGCGTCTCCGCGGTGG 48393 Score = 87.8 bits (96), Expect = 1e-12 Identities = 135/191 (71%), Gaps = 10/191 (5%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||| ||||| |||||| | ||||| ||| || || | || || ||| | Sbjct 48392 AATGCAAATATTTGTTAAAACTTTGACTGGAAAAACCATCACTTTGGAAGTAGAA----C 48337 Query 27849 CGACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATG 27903 || || ||| |||| || ||| |||||| ||||| |||||| |||| Sbjct 48336 CGTCGGA-TACTATCGAAAACGTTAAAGCAAAAATCCAAGACAAGGAAGGTATTCCTCCA 48278 Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || || || || |||||||| || || ||||||||||| || | |||| ||||| ||| Sbjct 48277 GACCAACAGCGTTTAATTTTCGCTGGCAAACAATTGGAAGATGGCCGCACATTGTCTGAT 48218 Query 27964 TACAACATCCA 27974 |||||||| || Sbjct 48217 TACAACATACA 48207 Score = 86.0 bits (94), Expect = 4e-12 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 27865 GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTT 27924 || ||| |||||| ||||| |||||| |||| || || || || |||||||| Sbjct 45838 GTTAAAGCAAAAATCCAAGACAAGGAAGGTATTCCTCCAGATCAACAGCGTTTAATTTTC 45779 Query 27925 GCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGC 27984 || || ||||||||||| || | |||| ||||| ||||||||||| ||||| || Sbjct 45778 GCTGGCAAACAATTGGAAGATGGCCGCACATTGTCTGATTACAACATACAAAAGGAATCT 45719 Query 27985 ACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||| | || ||||| ||||| | || || || Sbjct 45718 ACTCTTCACTTGGTACTGCGTCTCCGCGGAGG 45687 Score = 84.2 bits (92), Expect = 2e-11 Identities = 160/234 (68%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 27786 TAAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAG 27845 ||||||||| || || ||||| || | ||||| ||| ||| || | || || || Sbjct 48851 TAAAATGCAGATATTCGTGAAGACATTGACTGGAAAAACTATCACCTTGGAGGTTGAGCC 48792 Query 27846 CACCGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATG 27903 |||| | || | ||| || ||| ||||| || ||||| ||||| || Sbjct 48791 ATCCGATACTATTGAGAAT--GTTAAAACTAAAATTCAAGATAAAGAGGGTGTCCCACCA 48734 Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || || ||||| || || ||||| || ||||| ||||| | | |||| | || || Sbjct 48733 GATCAACAACGTTTGATCTTTGCTGGCAAACAGTTGGAAAATGGCCGCACACTCTCTGAC 48674 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 |||||||| || ||||| || | ||||||||||| ||||||||||| ||| Sbjct 48673 TACAACATTCAGAAAGAATCGACACTCCATTTGGTTTTACGTTTGCGTGGTGGC 48620 >seq110 Length=875010 Score = 114 bits (126), Expect = 9e-21 Identities = 167/236 (71%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 27781 AATAGTAAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTC 27840 |||| ||||||||||||||||| |||||||||||||| ||| |||||| | || || Sbjct 86196 AATATAAAAATGCAAATTTTTGTTAAAACTCTTACTGGCAAAACTATTACTTTGGAAGTT 86255 Query 27841 GAAAGCACCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCG 27900 || ||||| | | || ||||| ||||| || |||||||| |||| Sbjct 86256 GAGCCTTCCGACACTATTGAAAATGTCAAGGCCAAAATTCAGGATAAAGAAGGCATTCCT 86315 Query 27901 ATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCC 27960 || || ||||| || ||||| || || ||||||||||| || | || | || || Sbjct 86316 CCAGATCAACAACGTTTGATTTTCGCTGGTAAACAATTGGAAGATGGGCGGACTTTATCG 86375 Query 27961 GATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||| ||||| ||||| ||| || ||||| ||||| | ||| | ||||| || Sbjct 86376 GATTATAACATACAAAAGGAGTCGACCTTGCACTTGGTACTTCGTCTCCGTGGTGG 86431 >seq180 Length=539930 Score = 109 bits (120), Expect = 4e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 || ||||| |||||||| ||||| || || || || || || |||| |||||| | Sbjct 121605 AATATGCAGATTTTTGTAAAAACCCTAACGGGCAAGACCATCACTCTTGAGGTCGAACCC 121546 Query 27847 ACCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 | ||| | | || || ||| || || |||||||| || |||| || Sbjct 121545 TCGGACACTATCGAAAATGTAAAAGCCAAGATTCAGGACAAAGAGGGAATTCCACCCGAC 121486 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 |||||||| || ||||| || ||||| |||||||| || | |||| ||||||||||| Sbjct 121485 CAGCAACGATTGATTTTCGCTGGAAAGCAATTGGAAGATGGTCGCACATTGTCCGATTAT 121426 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 || || |||||||| ||| || ||| | || ||||||||||| || || Sbjct 121425 AATATTCAAAAAGAATCCACATTACATCTTGTGTTGCGTTTGCGAGGTGG 121376 >seq394 Length=301216 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 || || ||||| | ||| || ||||| || ||||||||||| ||||| |||||||| Sbjct 217381 GATAAGGAAGGAATCCCGCCAGATCAGCAGCGTTTAATTTTTGCTGGAAAGCAATTGGAG 217322 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | || | | || ||||| ||||| || |||||| ||||||||||| || | Sbjct 217321 GATGGCCGTACTCTTTCGGATTATAACATACAGAAAGAGTCAACTTTGCATTTAGTCCTA 217262 Query 28003 CGTTTGCGTGGCGGC 28017 ||||||||||| ||| Sbjct 217261 CGTTTGCGTGGGGGC 217247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355845372651402