Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020
15-01-15] 3,926 sequences; 380,104,241 total letters
Query= NC_029304.1
Length=111246
Score E
Sequences producing significant alignments: (Bits) Value
seq343 118 8e-22
seq110 114 9e-21
seq180 109 4e-19
seq394 91.5 1e-13
>seq343
Length=430003
Score = 118 bits (130), Expect = 8e-22
Identities = 168/235 (71%), Gaps = 10/235 (4%)
Strand=Plus/Minus
Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846
||||||||||| || || ||||| | ||||| ||| ||| || | || || |||
Sbjct 57706 AAAATGCAAATCTTCGTAAAAACATTAACTGGCAAAACTATCACTTTGGAAGTTGAA--- 57650
Query 27847 ACCGACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGA 27901
||| | | ||| |||| || ||| || || |||||||||||| ||||
Sbjct 57649 -CCGTC-AGATACTATCGAAAATGTTAAAGCCAAGATTCAAGACAAAGAAGGTATTCCTC 57592
Query 27902 TGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCG 27961
|| |||||||| || ||||||||||| || ||| |||| |||| ||||| ||||||||
Sbjct 57591 CAGACCAGCAACGTTTGATTTTTGCCGGCAAGCAACTGGAAGACGGACGCACCTTGTCCG 57532
Query 27962 ATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
|||| || || || || ||| || ||||||||||| | ||| |||| || ||
Sbjct 57531 ATTATAATATTCAGAAGGAGTCAACCTTGCATTTGGTCCTACGTCTGCGCGGTGG 57477
Score = 105 bits (116), Expect = 5e-18
Identities = 91/113 (81%), Gaps = 0/113 (0%)
Strand=Plus/Minus
Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963
|| || ||||| || ||||||||||| |||||| |||| |||| ||||| ||||||||||
Sbjct 54354 GATCAACAACGTTTGATTTTTGCCGGCAAACAACTGGAGGACGGACGCACCTTGTCCGAT 54295
Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
||||| || || || ||| || ||||||||||| | |||||||| || ||
Sbjct 54294 TACAATATTCAGAAGGAGTCAACCTTGCATTTGGTCCTACGTTTGCGCGGTGG 54242
Score = 98.7 bits (108), Expect = 7e-16
Identities = 113/152 (74%), Gaps = 0/152 (0%)
Strand=Plus/Minus
Query 27865 GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTT 27924
|| ||| |||||| ||||| |||||| |||| || || || || || || |||
Sbjct 48544 GTTAAAGCAAAAATCCAAGACAAGGAAGGTATTCCTCCAGACCAACAGCGTTTGATCTTT 48485
Query 27925 GCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGC 27984
|| |||||||| ||||| |||| |||| ||||| ||||||||||| || ||||| |
Sbjct 48484 GCTGGAAAACAGTTGGAAGACGGCCGCACGTTGTCTGATTACAACATACAGAAAGAATCC 48425
Query 27985 ACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
|| || |||||||| |||||| | || || ||
Sbjct 48424 ACATTACATTTGGTATTGCGTCTCCGCGGTGG 48393
Score = 87.8 bits (96), Expect = 1e-12
Identities = 135/191 (71%), Gaps = 10/191 (5%)
Strand=Plus/Minus
Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848
||||||||| ||||| |||||| | ||||| ||| || || | || || ||| |
Sbjct 48392 AATGCAAATATTTGTTAAAACTTTGACTGGAAAAACCATCACTTTGGAAGTAGAA----C 48337
Query 27849 CGACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATG 27903
|| || ||| |||| || ||| |||||| ||||| |||||| ||||
Sbjct 48336 CGTCGGA-TACTATCGAAAACGTTAAAGCAAAAATCCAAGACAAGGAAGGTATTCCTCCA 48278
Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963
|| || || || |||||||| || || ||||||||||| || | |||| ||||| |||
Sbjct 48277 GACCAACAGCGTTTAATTTTCGCTGGCAAACAATTGGAAGATGGCCGCACATTGTCTGAT 48218
Query 27964 TACAACATCCA 27974
|||||||| ||
Sbjct 48217 TACAACATACA 48207
Score = 86.0 bits (94), Expect = 4e-12
Identities = 110/152 (72%), Gaps = 0/152 (0%)
Strand=Plus/Minus
Query 27865 GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTT 27924
|| ||| |||||| ||||| |||||| |||| || || || || ||||||||
Sbjct 45838 GTTAAAGCAAAAATCCAAGACAAGGAAGGTATTCCTCCAGATCAACAGCGTTTAATTTTC 45779
Query 27925 GCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGC 27984
|| || ||||||||||| || | |||| ||||| ||||||||||| ||||| ||
Sbjct 45778 GCTGGCAAACAATTGGAAGATGGCCGCACATTGTCTGATTACAACATACAAAAGGAATCT 45719
Query 27985 ACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
||| | || ||||| ||||| | || || ||
Sbjct 45718 ACTCTTCACTTGGTACTGCGTCTCCGCGGAGG 45687
Score = 84.2 bits (92), Expect = 2e-11
Identities = 160/234 (68%), Gaps = 4/234 (2%)
Strand=Plus/Minus
Query 27786 TAAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAG 27845
||||||||| || || ||||| || | ||||| ||| ||| || | || || ||
Sbjct 48851 TAAAATGCAGATATTCGTGAAGACATTGACTGGAAAAACTATCACCTTGGAGGTTGAGCC 48792
Query 27846 CACCGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATG 27903
|||| | || | ||| || ||| ||||| || ||||| ||||| ||
Sbjct 48791 ATCCGATACTATTGAGAAT--GTTAAAACTAAAATTCAAGATAAAGAGGGTGTCCCACCA 48734
Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963
|| || ||||| || || ||||| || ||||| ||||| | | |||| | || ||
Sbjct 48733 GATCAACAACGTTTGATCTTTGCTGGCAAACAGTTGGAAAATGGCCGCACACTCTCTGAC 48674
Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017
|||||||| || ||||| || | ||||||||||| ||||||||||| |||
Sbjct 48673 TACAACATTCAGAAAGAATCGACACTCCATTTGGTTTTACGTTTGCGTGGTGGC 48620
>seq110
Length=875010
Score = 114 bits (126), Expect = 9e-21
Identities = 167/236 (71%), Gaps = 0/236 (0%)
Strand=Plus/Plus
Query 27781 AATAGTAAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTC 27840
|||| ||||||||||||||||| |||||||||||||| ||| |||||| | || ||
Sbjct 86196 AATATAAAAATGCAAATTTTTGTTAAAACTCTTACTGGCAAAACTATTACTTTGGAAGTT 86255
Query 27841 GAAAGCACCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCG 27900
|| ||||| | | || ||||| ||||| || |||||||| ||||
Sbjct 86256 GAGCCTTCCGACACTATTGAAAATGTCAAGGCCAAAATTCAGGATAAAGAAGGCATTCCT 86315
Query 27901 ATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCC 27960
|| || ||||| || ||||| || || ||||||||||| || | || | || ||
Sbjct 86316 CCAGATCAACAACGTTTGATTTTCGCTGGTAAACAATTGGAAGATGGGCGGACTTTATCG 86375
Query 27961 GATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
||||| ||||| ||||| ||| || ||||| ||||| | ||| | ||||| ||
Sbjct 86376 GATTATAACATACAAAAGGAGTCGACCTTGCACTTGGTACTTCGTCTCCGTGGTGG 86431
>seq180
Length=539930
Score = 109 bits (120), Expect = 4e-19
Identities = 162/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846
|| ||||| |||||||| ||||| || || || || || || |||| |||||| |
Sbjct 121605 AATATGCAGATTTTTGTAAAAACCCTAACGGGCAAGACCATCACTCTTGAGGTCGAACCC 121546
Query 27847 ACCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906
| ||| | | || || ||| || || |||||||| || |||| ||
Sbjct 121545 TCGGACACTATCGAAAATGTAAAAGCCAAGATTCAGGACAAAGAGGGAATTCCACCCGAC 121486
Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966
|||||||| || ||||| || ||||| |||||||| || | |||| |||||||||||
Sbjct 121485 CAGCAACGATTGATTTTCGCTGGAAAGCAATTGGAAGATGGTCGCACATTGTCCGATTAT 121426
Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
|| || |||||||| ||| || ||| | || ||||||||||| || ||
Sbjct 121425 AATATTCAAAAAGAATCCACATTACATCTTGTGTTGCGTTTGCGAGGTGG 121376
>seq394
Length=301216
Score = 91.5 bits (100), Expect = 1e-13
Identities = 101/135 (75%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942
|| || ||||| | ||| || ||||| || ||||||||||| ||||| ||||||||
Sbjct 217381 GATAAGGAAGGAATCCCGCCAGATCAGCAGCGTTTAATTTTTGCTGGAAAGCAATTGGAG 217322
Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002
|| | || | | || ||||| ||||| || |||||| ||||||||||| || |
Sbjct 217321 GATGGCCGTACTCTTTCGGATTATAACATACAGAAAGAGTCAACTTTGCATTTAGTCCTA 217262
Query 28003 CGTTTGCGTGGCGGC 28017
||||||||||| |||
Sbjct 217261 CGTTTGCGTGGGGGC 217247
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 355845372651402
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |