Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020
15-01-15] 3,926 sequences; 380,104,241 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq394 132 1e-25
seq343 131 4e-25
seq110 122 2e-22
>seq394
Length=301216
Score = 132 bits (146), Expect = 1e-25
Identities = 162/221 (73%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953
||||| | || || | || || || || || |||||||| ||||| || | | |||
Sbjct 217026 CGAAGACGTAACACCAAATGGAGCGTAGATTCCTTTTGGATATTATAGTCTGACAAGGTG 217085
Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013
| ||||||||||||||||| || || || || | ||| ||||| || ||||||| |||
Sbjct 217086 CGGCCATCTTCCAGCTGCTTACCGGCAAAAATTAAGCGCTGTTGATCTGGAGGAATGCCT 217145
Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073
|| ||||| || || ||| ||| ||||| || || || || ||| ||| || || | |
Sbjct 217146 TCTTTGTCTTGAATTTTTGCTTTAACGTTCTCAATAGTATCCGAGGGTTCTACTTCTAAA 217205
Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
||||| || || || || | ||| |||||||| | ||||||
Sbjct 217206 GTGATGGTTTTACCTGTCAAAGTTTTTACAAAGATCTGCAT 217246
Score = 120 bits (132), Expect = 7e-22
Identities = 156/216 (72%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 210902 TAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATC 210961
|||||| | || | ||| |||||||| || ||||||||||||| ||| || | |||||
Sbjct 217262 TAGGACTAAATGCAAAGTTGACTCTTTCTGTATGTTATAATCCGAAAGAGTACGGCCATC 217321
Query 210962 TTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021
|||| ||||| || || || || | || || || || || || | ||||||||| ||
Sbjct 217322 CTCCAATTGCTTTCCAGCAAAAATTAAACGCTGCTGATCTGGCGGGATTCCTTCCTTATC 217381
Query 211022 CTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGT 211081
|| || || || || || || || |||||||| |||||||| | |||||| ||
Sbjct 217382 TTGAATTTTAGCCTTGACATTCTCAATAGTGTCAGACGGCTCAACCTCTAAAGTGATAGT 217441
Query 211082 CTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117
|| || || | ||||| || || | |||||||||
Sbjct 217442 TTTGCCAGTCAATGTCTTCACGAAGATCTGCATTTT 217477
>seq343
Length=430003
Score = 131 bits (144), Expect = 4e-25
Identities = 147/197 (75%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977
||||| ||||| || ||||| ||||| | | || | || ||||||| ||| || ||
Sbjct 48423 GTGGATTCTTTCTGTATGTTGTAATCAGACAACGTGCGGCCGTCTTCCAACTGTTTTCCA 48482
Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037
|| ||||| | || |||||||| ||||||| ||||||||||| ||||| ||| |||
Sbjct 48483 GCAAAGATCAAACGCTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGGATTTTTGCTTTA 48542
Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097
||||||||||| || || || ||| || || | |||||| || || || || | ||||
Sbjct 48543 ACGTTTTCGATAGTATCCGACGATTCTACTTCCAAAGTGATGGTTTTACCGGTCAAAGTC 48602
Query 211098 TTTACAAACACCTGCAT 211114
|| ||||| | |||||
Sbjct 48603 TTAACAAATATTTGCAT 48619
Score = 127 bits (140), Expect = 5e-24
Identities = 139/185 (75%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || | ||||||||| || || ||||| ||||| ||||| | | || | ||||||
Sbjct 45702 AGTACCAAGTGAAGAGTAGATTCCTTTTGTATGTTGTAATCAGACAATGTGCGGCCATCT 45761
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|||| || ||||| ||||| || | || ||||| || ||||||| |||||||||||
Sbjct 45762 TCCAATTGTTTGCCAGCGAAAATTAAACGCTGTTGATCTGGAGGAATACCTTCCTTGTCT 45821
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
||||| ||| ||| ||||||||||| || || || ||| || || | |||||| ||
Sbjct 45822 TGGATTTTTGCTTTAACGTTTTCGATAGTATCCGACGGTTCTACTTCCAAAGTGATGGTT 45881
Query 211083 TTTCC 211087
|||||
Sbjct 45882 TTTCC 45886
Score = 123 bits (136), Expect = 6e-23
Identities = 139/186 (75%), Gaps = 0/186 (0%)
Strand=Plus/Plus
Query 210930 TGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGG 210989
|| ||||| ||||| | | || | |||||||||| || ||||| ||||| || |
Sbjct 48207 TGTATGTTGTAATCAGACAATGTGCGGCCATCTTCCAATTGTTTGCCAGCGAAAATTAAA 48266
Query 210990 CGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATG 211049
|| |||||||| ||||||| ||||||||||| ||||| ||| ||| |||||||||||
Sbjct 48267 CGCTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGGATTTTTGCTTTAACGTTTTCGATA 48326
Query 211050 GTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACC 211109
|| || || ||| || || | |||||| || ||||| || | ||| || ||||| |
Sbjct 48327 GTATCCGACGGTTCTACTTCCAAAGTGATGGTTTTTCCAGTCAAAGTTTTAACAAATATT 48386
Query 211110 TGCATT 211115
||||||
Sbjct 48387 TGCATT 48392
>seq110
Length=875010
Score = 122 bits (134), Expect = 2e-22
Identities = 147/200 (74%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977
|| ||||| ||||| ||||||||||||| | |||| |||||||||| || || ||
Sbjct 86401 GTCGACTCCTTTTGTATGTTATAATCCGATAAAGTCCGCCCATCTTCCAATTGTTTACCA 86342
Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037
||||| || | |||||||| || ||||||| ||||| || ||||| || || ||
Sbjct 86341 GCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTATCCTGAATTTTGGCCTTG 86282
Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097
|| ||||| || ||||| || ||||| || | ||| || || || || || |||||
Sbjct 86281 ACATTTTCAATAGTGTCGGAAGGCTCAACTTCCAAAGTAATAGTTTTGCCAGTAAGAGTT 86222
Query 211098 TTTACAAACACCTGCATTTT 211117
|| ||||| | ||||||||
Sbjct 86221 TTAACAAAAATTTGCATTTT 86202
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1159093692480990
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |