Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020 15-01-15] 3,926 sequences; 380,104,241 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq394 132 1e-25 seq343 131 4e-25 seq110 122 2e-22 >seq394 Length=301216 Score = 132 bits (146), Expect = 1e-25 Identities = 162/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||| | || || | || || || || || |||||||| ||||| || | | ||| Sbjct 217026 CGAAGACGTAACACCAAATGGAGCGTAGATTCCTTTTGGATATTATAGTCTGACAAGGTG 217085 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | ||||||||||||||||| || || || || | ||| ||||| || ||||||| ||| Sbjct 217086 CGGCCATCTTCCAGCTGCTTACCGGCAAAAATTAAGCGCTGTTGATCTGGAGGAATGCCT 217145 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 || ||||| || || ||| ||| ||||| || || || || ||| ||| || || | | Sbjct 217146 TCTTTGTCTTGAATTTTTGCTTTAACGTTCTCAATAGTATCCGAGGGTTCTACTTCTAAA 217205 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || || || | ||| |||||||| | |||||| Sbjct 217206 GTGATGGTTTTACCTGTCAAAGTTTTTACAAAGATCTGCAT 217246 Score = 120 bits (132), Expect = 7e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 210902 TAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATC 210961 |||||| | || | ||| |||||||| || ||||||||||||| ||| || | ||||| Sbjct 217262 TAGGACTAAATGCAAAGTTGACTCTTTCTGTATGTTATAATCCGAAAGAGTACGGCCATC 217321 Query 210962 TTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021 |||| ||||| || || || || | || || || || || || | ||||||||| || Sbjct 217322 CTCCAATTGCTTTCCAGCAAAAATTAAACGCTGCTGATCTGGCGGGATTCCTTCCTTATC 217381 Query 211022 CTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGT 211081 || || || || || || || || |||||||| |||||||| | |||||| || Sbjct 217382 TTGAATTTTAGCCTTGACATTCTCAATAGTGTCAGACGGCTCAACCTCTAAAGTGATAGT 217441 Query 211082 CTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || || | ||||| || || | ||||||||| Sbjct 217442 TTTGCCAGTCAATGTCTTCACGAAGATCTGCATTTT 217477 >seq343 Length=430003 Score = 131 bits (144), Expect = 4e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 ||||| ||||| || ||||| ||||| | | || | || ||||||| ||| || || Sbjct 48423 GTGGATTCTTTCTGTATGTTGTAATCAGACAACGTGCGGCCGTCTTCCAACTGTTTTCCA 48482 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 || ||||| | || |||||||| ||||||| ||||||||||| ||||| ||| ||| Sbjct 48483 GCAAAGATCAAACGCTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGGATTTTTGCTTTA 48542 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097 ||||||||||| || || || ||| || || | |||||| || || || || | |||| Sbjct 48543 ACGTTTTCGATAGTATCCGACGATTCTACTTCCAAAGTGATGGTTTTACCGGTCAAAGTC 48602 Query 211098 TTTACAAACACCTGCAT 211114 || ||||| | ||||| Sbjct 48603 TTAACAAATATTTGCAT 48619 Score = 127 bits (140), Expect = 5e-24 Identities = 139/185 (75%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||||||||| || || ||||| ||||| ||||| | | || | |||||| Sbjct 45702 AGTACCAAGTGAAGAGTAGATTCCTTTTGTATGTTGTAATCAGACAATGTGCGGCCATCT 45761 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| || ||||| ||||| || | || ||||| || ||||||| ||||||||||| Sbjct 45762 TCCAATTGTTTGCCAGCGAAAATTAAACGCTGTTGATCTGGAGGAATACCTTCCTTGTCT 45821 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||| ||| ||| ||||||||||| || || || ||| || || | |||||| || Sbjct 45822 TGGATTTTTGCTTTAACGTTTTCGATAGTATCCGACGGTTCTACTTCCAAAGTGATGGTT 45881 Query 211083 TTTCC 211087 ||||| Sbjct 45882 TTTCC 45886 Score = 123 bits (136), Expect = 6e-23 Identities = 139/186 (75%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 210930 TGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGG 210989 || ||||| ||||| | | || | |||||||||| || ||||| ||||| || | Sbjct 48207 TGTATGTTGTAATCAGACAATGTGCGGCCATCTTCCAATTGTTTGCCAGCGAAAATTAAA 48266 Query 210990 CGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATG 211049 || |||||||| ||||||| ||||||||||| ||||| ||| ||| ||||||||||| Sbjct 48267 CGCTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGGATTTTTGCTTTAACGTTTTCGATA 48326 Query 211050 GTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACC 211109 || || || ||| || || | |||||| || ||||| || | ||| || ||||| | Sbjct 48327 GTATCCGACGGTTCTACTTCCAAAGTGATGGTTTTTCCAGTCAAAGTTTTAACAAATATT 48386 Query 211110 TGCATT 211115 |||||| Sbjct 48387 TGCATT 48392 >seq110 Length=875010 Score = 122 bits (134), Expect = 2e-22 Identities = 147/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 || ||||| ||||| ||||||||||||| | |||| |||||||||| || || || Sbjct 86401 GTCGACTCCTTTTGTATGTTATAATCCGATAAAGTCCGCCCATCTTCCAATTGTTTACCA 86342 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 ||||| || | |||||||| || ||||||| ||||| || ||||| || || || Sbjct 86341 GCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTATCCTGAATTTTGGCCTTG 86282 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097 || ||||| || ||||| || ||||| || | ||| || || || || || ||||| Sbjct 86281 ACATTTTCAATAGTGTCGGAAGGCTCAACTTCCAAAGTAATAGTTTTGCCAGTAAGAGTT 86222 Query 211098 TTTACAAACACCTGCATTTT 211117 || ||||| | |||||||| Sbjct 86221 TTAACAAAAATTTGCATTTT 86202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159093692480990