Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020 15-01-15] 3,926 sequences; 380,104,241 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq394 89.7 4e-13 seq343 87.8 2e-12 >seq394 Length=301216 Score = 89.7 bits (98), Expect = 4e-13 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 39057 GCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC-GG 39115 |||||| | | |||||||||||||| ||||| || ||||| |||||||| || | Sbjct 217019 GCCTCCGCGAAGACGTAACACCAAATGGAGCGTAGATTCCTTTTGGATATTATAGTCTGA 217078 Query 39116 CAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGG 39175 |||| || || | || || ||||| || || ||||| || | ||||| || || | | Sbjct 217079 CAAG-GTGCGGCCATCTTCCAGCTGCTTACCGGCAAAAATTAAGCGCTGTTGATCTGGAG 217137 Query 39176 GCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCG-TCGCCACCGTATCGCTCGACTCC 39234 | | || ||||||| | ||| ||| || || | || || | | ||||| | || Sbjct 217138 GAATGCCTTCTTTGT-CTTGAATTTTTGCTTTAACGTTCTCAATAGTATCCGAGGGTTCT 217196 Query 39235 ACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || || | ||||| |||| || |||| ||||| |||||||| ||||| Sbjct 217197 ACTTCTAAAGTGATGGTTTTACCTGTCAAAGTTTTTACAAAGATCTGCAT 217246 >seq343 Length=430003 Score = 87.8 bits (96), Expect = 2e-12 Identities = 153/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGG-CAAGTGTTCGTTC 39128 |||| |||||||| | || ||| || || ||||||||||||| |||| || ||| | Sbjct 57489 CGTAGGACCAAATGCAAGGTTGACTCCTTCTGAATATTATAATCGGACAAG-GTGCGTCC 57547 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 ||| || || || ||||| ||||| || | ||| |||||||| | || | | ||||| Sbjct 57548 GTCTTCCAGTTGCTTGCCGGCAAAAATCAAACGTTGCTGGTCTGGAGGAATACCTTCTTT 57607 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248 ||| || || ||| | | | | ||||| || || || |||| ||||| Sbjct 57608 GTCTTGAATCTTGGCTTTAACATTTTCGATAGTATCTGACGGTTCAACTTCCAAAGTGAT 57667 Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTT 39288 | |||| || || | ||||| || ||||||||||| ||| Sbjct 57668 AGTTTTGCCAGTTAATGTTTTTACGAAGATTTGCATTTTT 57707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429525047048438