Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020 15-01-15] 3,926 sequences; 380,104,241 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq343 152 3e-32 seq180 147 1e-30 seq110 143 2e-29 seq394 141 6e-29 >seq343 Length=430003 Score = 152 bits (168), Expect = 3e-32 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || ||||| || | || || ||||| |||||| | ||||| || || || Sbjct 48619 ATGCAAATATTTGTTAAGACTTTGACCGGTAAAACCATCACTTTGGAAGTAGAATCGTCG 48560 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || ||| | |||| | ||| |||||| ||||| |||||| | || ||||| ||| Sbjct 48559 GATACTATCGAAAACGTTAAAGCAAAAATCCAAGACAAGGAAGGTATTCCTCCAGACCAA 48500 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||||| || ||||| || ||||| ||||||||| ||||| || ||||||||| Sbjct 48499 CAGCGTTTGATCTTTGCTGGAAAACAGTTGGAAGACGGCCGCACGTTGTCTGATTACAAC 48440 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 ||||| ||||| |||||||||||||| || || Sbjct 48439 ATACAGAAAGAATCCACATTACATTTGGTATT 48408 Score = 152 bits (168), Expect = 3e-32 Identities = 175/233 (75%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 23606 TTAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACT 23665 ||||||||||||| ||||| || || | || |||||||| ||||| | || ||||| Sbjct 48852 TTAAAATGCAGATATTCGTGAAGACATTGACTGGAAAAACTATCACCTTGGAGGTTGAGC 48793 Query 23666 CCACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCA 23724 | | || ||| |||| ||| ||||||| |||| || || ||||| ||||| || ||| Sbjct 48792 CATCCGATACTATTGAGAATGTTAAAACTAAAA-TTCAAGATAAAGAGGGTGTCCCACCA 48734 Query 23725 GATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGAT 23784 |||||||| ||||| || ||||| |||||||| ||||| | | ||||| | || Sbjct 48733 GATCAACAACGTTTGATCTTTGCTGGCAAACAGTTGGAAAATGGCCGCACACTCTCTGAC 48674 Query 23785 TACAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 |||||||| || ||||| || ||| | ||||| |||||| | ||||| || || Sbjct 48673 TACAACATTCAGAAAGAATCGACACTCCATTTGGTTTTACGTTTGCGTGGTGG 48621 Score = 149 bits (164), Expect = 4e-31 Identities = 173/231 (75%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 |||||||| || ||||| ||||| | || || ||||| |||||| | |||||||| | Sbjct 57706 AAAATGCAAATCTTCGTAAAAACATTAACTGGCAAAACTATCACTTTGGAAGTTGAACCG 57647 Query 23668 ACGGACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | || ||| | |||| | ||||| | || | || |||||||||||| | || ||||| Sbjct 57646 TCAGATACTATCGAAAATGTTAAAGCCAAGA-TTCAAGACAAAGAAGGTATTCCTCCAGA 57588 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || || ||||| || ||||||||||| ||||||||||||| |||||| || |||||| Sbjct 57587 CCAGCAACGTTTGATTTTTGCCGGCAAGCAACTGGAAGACGGACGCACCTTGTCCGATTA 57528 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || || || ||||| || || ||||| || || | |||| || || Sbjct 57527 TAATATTCAGAAGGAGTCAACCTTGCATTTGGTCCTACGTCTGCGCGGTGG 57477 Score = 132 bits (146), Expect = 3e-26 Identities = 141/186 (76%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || || |||||||| | || |||||||| |||||| | ||||| || | | Sbjct 48392 AATGCAAATATTTGTTAAAACTTTGACTGGAAAAACCATCACTTTGGAAGTAGAACCGTC 48333 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||| ||| | |||| | ||| |||||| ||||| |||||| | || ||||| || Sbjct 48332 GGATACTATCGAAAACGTTAAAGCAAAAATCCAAGACAAGGAAGGTATTCCTCCAGACCA 48273 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||||||||| || || ||||||||| ||||||| | ||||| || |||||||| Sbjct 48272 ACAGCGTTTAATTTTCGCTGGCAAACAATTGGAAGATGGCCGCACATTGTCTGATTACAA 48213 Query 23790 CATACA 23795 |||||| Sbjct 48212 CATACA 48207 Score = 127 bits (140), Expect = 1e-24 Identities = 130/170 (76%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 23638 GGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGAAATATTAAAACAAAAA 23697 |||||||| |||||| | ||||| || | |||| ||| | |||| | ||| |||| Sbjct 45886 GGAAAAACCATCACTTTGGAAGTAGAACCGTCGGATACTATCGAAAACGTTAAAGCAAAA 45827 Query 23698 ATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAA 23757 || ||||| |||||| | || |||||||||||||||||||| || || ||||||||| Sbjct 45826 ATCCAAGACAAGGAAGGTATTCCTCCAGATCAACAGCGTTTAATTTTCGCTGGCAAACAA 45767 Query 23758 CTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCAC 23807 ||||||| | ||||| || ||||||||||||||||| || || || Sbjct 45766 TTGGAAGATGGCCGCACATTGTCTGATTACAACATACAAAAGGAATCTAC 45717 Score = 114 bits (126), Expect = 9e-21 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 23695 AAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAA 23754 |||||| || || ||||| | || ||||||||||| ||||| || |||||||||||| Sbjct 54384 AAAATTCAAGATAAGGAAGGAATCCCCCCAGATCAACAACGTTTGATTTTTGCCGGCAAA 54325 Query 23755 CAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACAT 23814 |||||||| |||| |||||| || ||||||||| || || || ||||| || || ||| Sbjct 54324 CAACTGGAGGACGGACGCACCTTGTCCGATTACAATATTCAGAAGGAGTCAACCTTGCAT 54265 Query 23815 TTAGTTTTAAGGTTGCGAGGAGG 23837 || || || | ||||| || || Sbjct 54264 TTGGTCCTACGTTTGCGCGGTGG 54242 >seq180 Length=539930 Score = 147 bits (162), Expect = 1e-30 Identities = 173/234 (74%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || ||||||||||| || |||||||| ||||| || || |||||||| || || || || Sbjct 121605 AATATGCAGATTTTTGTAAAAACCCTAACGGGCAAGACCATCACTCTTGAGGTCGAACCC 121546 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 |||||||| | |||| ||||| || ||| |||||||| || | || || || Sbjct 121545 TCGGACACTATCGAAAATGTAAAAGCCAAGATTCAGGACAAAGAGGGAATTCCACCCGAC 121486 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || || || || || || || || || ||| ||||||| | ||||| || |||||| Sbjct 121485 CAGCAACGATTGATTTTCGCTGGAAAGCAATTGGAAGATGGTCGCACATTGTCCGATTAT 121426 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGATCA 23841 || || |||||||| |||||||||||| | || || | |||||||| ||| || Sbjct 121425 AATATTCAAAAAGAATCCACATTACATCTTGTGTTGCGTTTGCGAGGTGGAGCA 121372 >seq110 Length=875010 Score = 143 bits (158), Expect = 2e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 |||||||| ||||| |||||||| || || || ||||| || ||| | |||||||| | Sbjct 86202 AAAATGCAAATTTTTGTTAAAACTCTTACTGGCAAAACTATTACTTTGGAAGTTGAGCCT 86261 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | |||||| |||||| | || |||||| || |||||||| | || |||||| Sbjct 86262 TCCGACACTATTGAAAATGTCAAGGCCAAAATTCAGGATAAAGAAGGCATTCCTCCAGAT 86321 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 ||||| ||||| || || || || |||||| ||||||| | || |||||| ||||| Sbjct 86322 CAACAACGTTTGATTTTCGCTGGTAAACAATTGGAAGATGGGCGGACTTTATCGGATTAT 86381 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGT 23819 ||||||||||| ||||| || || || || || Sbjct 86382 AACATACAAAAGGAGTCGACCTTGCACTTGGT 86413 >seq394 Length=301216 Score = 141 bits (156), Expect = 6e-29 Identities = 177/239 (74%), Gaps = 3/239 (1%) Strand=Plus/Minus Query 23601 ATTACTTAAAA-TGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAG 23659 ||| ||||||| ||||||| ||||| || || | || || ||||| |||||| | || | Sbjct 217485 ATTTCTTAAAAATGCAGATCTTCGTGAAGACATTGACTGGCAAAACTATCACTTTAGAGG 217426 Query 23660 TTGACTCCACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTA 23718 |||| | | |||||| |||| ||| | || | |||| || || || ||||| | Sbjct 217425 TTGAGCCGTCTGACACTATTGAGAATGTCAAGGCTAAAA-TTCAAGATAAGGAAGGAATC 217367 Query 23719 CCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTA 23778 ||||||||||| ||||||||||| ||||| || || ||| |||| || | || ||| | Sbjct 217366 CCGCCAGATCAGCAGCGTTTAATTTTTGCTGGAAAGCAATTGGAGGATGGCCGTACTCTT 217307 Query 23779 GGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||||| |||||||| |||||||| || || |||||||| || | ||||| || || Sbjct 217306 TCGGATTATAACATACAGAAAGAGTCAACTTTGCATTTAGTCCTACGTTTGCGTGGGGG 217248 Score = 138 bits (152), Expect = 8e-28 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || ||||| | || || ||||| |||||| | ||||| || || || Sbjct 217246 ATGCAGATCTTTGTAAAAACTTTGACAGGTAAAACCATCACTTTAGAAGTAGAACCCTCG 217187 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || ||| |||| || ||||| |||||| || ||||||||||| | || |||||||| Sbjct 217186 GATACTATTGAGAACGTTAAAGCAAAAA-TTCAAGACAAAGAAGGCATTCCTCCAGATCA 217128 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| ||||| |||||||| || || |||||||| | ||||| || || || || Sbjct 217127 ACAGCGCTTAATTTTTGCCGGTAAGCAGCTGGAAGATGGCCGCACCTTGTCAGACTATAA 217068 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || ||||| || || || | ||||| || ||| | | || ||||| Sbjct 217067 TATCCAAAAGGAATCTACGCTCCATTTGGTGTTACGTCTTCGCGGAGG 217020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337993426874408