Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020 15-01-15] 3,926 sequences; 380,104,241 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq180 152 1e-31 seq343 138 3e-27 seq394 136 9e-27 seq168 107 5e-18 seq189 102 2e-16 seq68 96.9 8e-15 seq615 89.7 1e-12 seq399 89.7 1e-12 >seq180 Length=539930 Score = 152 bits (168), Expect = 1e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225505 ACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCT 225564 ||||| || | |||||||||||||| | ||| ||||||| ||| || | |||||||| Sbjct 121394 ACAAGATGTAATGTGGATTCTTTTTGAATATTATAATCGGACAATGTGCGACCATCTTCC 121453 Query 225565 AGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGG 225624 | ||||| |||||||| || | |||||| |||||||| ||||| || || ||||| || Sbjct 121454 AATTGCTTTCCAGCGAAAATCAATCGTTGCTGGTCGGGTGGAATTCCCTCTTTGTCCTGA 121513 Query 225625 ATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTG 225684 ||||| || ||| |||||| ||||| |||| ||| || || | ||||| |||||| Sbjct 121514 ATCTTGGCTTTTACATTTTCGATAGTGTCCGAGGGTTCGACCTCAAGAGTGATGGTCTTG 121573 Query 225685 CCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| | ||||||| || | ||||| || Sbjct 121574 CCCGTTAGGGTTTTTACAAAAATCTGCATATT 121605 >seq343 Length=430003 Score = 138 bits (152), Expect = 3e-27 Identities = 151/198 (76%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 ||||||||||| || | |||||||| | ||| || | || ||||| | ||| || ||| Sbjct 48423 GTGGATTCTTTCTGTATGTTGTAATCAGACAACGTGCGGCCGTCTTCCAACTGTTTTCCA 48482 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC-TT 225635 || ||||| | || |||||||| || ||||||||||||||||||||||| |||||| || Sbjct 48483 GCAAAGATCAAACGCTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGGAT-TTTTGCTTT 48541 Query 225636 CACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGT 225695 || |||||| || || || | ||| || || || ||||| || || || |||||||| Sbjct 48542 AACGTTTTCGATAGTATCCGACGATTCTACTTCCAAAGTGATGGTTTTACCGGTCAAAGT 48601 Query 225696 TTTTATGAACACTTGCAT 225713 || | || | |||||| Sbjct 48602 CTTAACAAATATTTGCAT 48619 Score = 136 bits (150), Expect = 9e-27 Identities = 150/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 || || || || || | ||| ||||||| ||| || | || ||||| || ||||| || Sbjct 57507 GTTGACTCCTTCTGAATATTATAATCGGACAAGGTGCGTCCGTCTTCCAGTTGCTTGCCG 57566 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTC 225636 || || || | ||||| ||||| || ||||||||||| |||||||| ||||| || Sbjct 57567 GCAAAAATCAAACGTTGCTGGTCTGGAGGAATACCTTCTTTGTCTTGAATCTTGGCTTTA 57626 Query 225637 ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTT 225696 ||| |||||| || ||||| | ||| || || || ||||| || ||||| || || ||| Sbjct 57627 ACATTTTCGATAGTATCTGACGGTTCAACTTCCAAAGTGATAGTTTTGCCAGTTAATGTT 57686 Query 225697 TTTATGAACACTTGCATTTT 225716 |||| ||| | ||||||||| Sbjct 57687 TTTACGAAGATTTGCATTTT 57706 Score = 131 bits (144), Expect = 4e-25 Identities = 139/181 (77%), Gaps = 2/181 (1%) Strand=Plus/Plus Query 225535 TTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGT 225594 |||||||| | ||| || | |||||||| | || || |||||||| || | || ||| Sbjct 48213 TTGTAATCAGACAATGTGCGGCCATCTTCCAATTGTTTGCCAGCGAAAATTAAACGCTGT 48272 Query 225595 TGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTC 225653 ||||| || ||||||||||||||||||||||| |||||| || || |||||| || || Sbjct 48273 TGGTCTGGAGGAATACCTTCCTTGTCTTGGAT-TTTTGCTTTAACGTTTTCGATAGTATC 48331 Query 225654 TGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || | ||| || || || ||||| || || || ||||||||||| | || | |||||| Sbjct 48332 CGACGGTTCTACTTCCAAAGTGATGGTTTTTCCAGTCAAAGTTTTAACAAATATTTGCAT 48391 Query 225714 T 225714 | Sbjct 48392 T 48392 Score = 123 bits (136), Expect = 6e-23 Identities = 146/195 (75%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | ||| || | ||| ||||| ||||| ||||| | |||||||| | ||| || Sbjct 45693 CGGAGACGCAGTACCAAGTGAAGAGTAGATTCCTTTTGTATGTTGTAATCAGACAATGTG 45752 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | |||||||| | || || |||||||| || | || ||||| || || ||||||||| Sbjct 45753 CGGCCATCTTCCAATTGTTTGCCAGCGAAAATTAAACGCTGTTGATCTGGAGGAATACCT 45812 Query 225613 TCCTTGTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||||||||| |||||| || || |||||| || || || | ||| || || || Sbjct 45813 TCCTTGTCTTGGAT-TTTTGCTTTAACGTTTTCGATAGTATCCGACGGTTCTACTTCCAA 45871 Query 225672 CGTGATCGTCTTGCC 225686 ||||| || || || Sbjct 45872 AGTGATGGTTTTTCC 45886 >seq394 Length=301216 Score = 136 bits (150), Expect = 9e-27 Identities = 154/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 ||||| || ||||| ||||||| ||| || || | ||| || | |||||||| |||||| Sbjct 217044 TGGAGCGTAGATTCCTTTTGGATATTATAGTCTGACAAGGTGCGGCCATCTTCCAGCTGC 217103 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || || || || || | || ||||| || || ||||| ||||| |||||||| || ||| Sbjct 217104 TTACCGGCAAAAATTAAGCGCTGTTGATCTGGAGGAATGCCTTCTTTGTCTTGAAT-TTT 217162 Query 225631 TGCTTCACAGCT-TCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 ||||| | | | || || || || |||| ||| || ||||| ||||| || || || || Sbjct 217163 TGCTTTAACGTTCTCAATAGTATCCGAGGGTTCTACTTCTAAAGTGATGGTTTTACCTGT 217222 Query 225690 CAAAGTTTTTATGAACACTTGCAT 225713 ||||||||||| || | ||||| Sbjct 217223 CAAAGTTTTTACAAAGATCTGCAT 217246 >seq168 Length=460731 Score = 107 bits (118), Expect = 5e-18 Identities = 83/99 (84%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||||||||| ||||||||||| |||| |||||||||||| |||||||| || || || | Sbjct 35346 TTCAGGATGGCCAAAAAATCAAAATAGATGTTGATAAAGAATAGGATCTCCCCCTCCAGC 35287 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770 |||||||||||| ||||| ||||| | ||||||||| Sbjct 35286 TGGATCAAAAAATGAGGTATTTAAATTACGATCAGTTAA 35248 >seq189 Length=537027 Score = 102 bits (112), Expect = 2e-16 Identities = 82/99 (83%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||||||||||||||||||||| ||||||||||||||||| |||||||| || | | | Sbjct 242 TTCAGGATGACCAAAAAATCAAAATAAATGTTGATAAAGAATAGGATCTCCCTCATCAGC 301 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770 ||| |||||||| ||||| ||||| | ||||||||| Sbjct 302 TGGGTCAAAAAATGATGTATTTAAATTACGATCAGTTAA 340 >seq68 Length=706895 Score = 96.9 bits (106), Expect = 8e-15 Identities = 127/175 (73%), Gaps = 1/175 (1%) Strand=Plus/Plus Query 7553 AACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGC 7612 || |||| || || || | || || ||||| ||| |||| |||||||| || || Sbjct 643690 AAATTTATAATGTAATCGTAACAGCTCATGCATTTATTATAATTTTCTTCATTTCAATTT 643749 Query 7613 -CGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGAT 7671 | |||| || || || || || |||||||| ||||| ||||| |||| ||||||||| Sbjct 643750 TCTATTATAATTGGAGGATTTGGTAATTGATTAGTTCCGTTAATACTTGGAGCTCCTGAT 643809 Query 7672 ATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTAT 7726 || || ||||| | | || ||||||| |||||| || |||| ||| | |||| Sbjct 643810 ATAGCCTTTCCCCGAATAAATAATATAAAATTTTGACTATTACCTCCTGCTTTAT 643864 >seq615 Length=258702 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||||||||||||||||||||| |||||| |||||||||| |||||||| || || || | Sbjct 197147 TTCAGGATGACCAAAAAATCAAAATAAACGTTGATAAAGAATAGGATCTCCCCCACCAGC 197206 Query 370732 TGGATCAAAAAA 370743 |||||| ||||| Sbjct 197207 TGGATCCAAAAA 197218 >seq399 Length=409954 Score = 89.7 bits (98), Expect = 1e-12 Identities = 84/105 (80%), Gaps = 3/105 (3%) Strand=Plus/Plus Query 370668 ATAATTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGC 370727 ||| |||||| ||| |||||| ||| ||||| ||||||||||| || ||||| ||||| | Sbjct 252478 ATACTTCAGGTTGATCAAAAAGTCAAAATAAGTGTTGATAAAGAATTGGATCCCCTCCTC 252537 Query 370728 CTGATGGATCA--AAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770 | | ||||| |||||| | ||||| ||||||| ||| ||||| Sbjct 252538 CAGCATGATCAAGAAAAAGAT-GTATTTAAATTTCGATCTGTTAA 252581 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192471213444644