Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020 15-01-15] 3,926 sequences; 380,104,241 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq158 307 9e-79 >seq158 Length=613782 Score = 307 bits (340), Expect = 9e-79 Identities = 518/735 (70%), Gaps = 15/735 (2%) Strand=Plus/Plus Query 4354 TTTCACACTT-TAGAGCTACAAGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATG 4412 |||| ||| | ||| ||| ||||| || || || ||| |||||||||| | | ||| Sbjct 555550 TTTCCCACCTCTAGTTCTAATAGCAAACGATCGGCAACATATTCTATATATTTACACATA 555609 Query 4413 AGTTCGCAGTTAATTCCAATTAATCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCT 4472 ||||| ||| || |||||||| || |||| || | |||||||||||||| ||| Sbjct 555610 CTTTCGCTGTTCATGCCAATTAAGTCGACTGGTAAGGCCTCTGTCAAAAACTCTTTTTCA 555669 Query 4473 ATAGTTACGGCTTCTGTGATTATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAG 4532 || | ||||| ||||| ||||| || || ||||| ||||| | || || Sbjct 555670 ATTTTAACGGCATCTGTTATTATTTCCAAAATCCGTTCTTTGCTCGGTTTTTGTATCAAA 555729 Query 4533 TATCCAAACAATAAACACGCAAAATCACAATGCAAACCTTCGTCTC-TGCTAATCAGTTC 4591 | | ||||| ||| |||||| ||||| ||||| ||||| || | || || ||| ||| Sbjct 555730 TGTTTAAACATTAATACCGCAAATTCACAGTGCAAGCCTTCATCGCGTGATA-TCATTTC 555788 Query 4592 GTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAA 4651 ||||| |||||||| || ||||||| || | || || ||||||||||| | || || Sbjct 555789 ATTAGAGAACGTTAAACCTGGCATTATTCCACGTTTCTTTAGCCAAAATATCGAAGCGAA 555848 Query 4652 TGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACG- 4710 |||| ||||||||| ||||| ||||| || || |||| | || ||||| Sbjct 555849 GCTCCCACTAAAGAATATACCTTCGACGGCAGCGAAAGCTATAACACGTTCACCGAAATT 555908 Query 4711 AGCTGGCTTTGTCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAA 4770 ||| | | | || |||| || |||||| | || || |||||||| | || | Sbjct 555909 AGCCGAATGCGATGATA-TCCAAGCTAGTGCCCATTCCGCCTTCTTCTTAACCAATGGCA 555967 Query 4771 TTGTGTATATAGCGTTAAATA-AT-TTACTTTT--TTCAAATGGGTCTTGAATATAAGTG 4826 |||| | || || ||||||| || || ||||| ||| || ||| ||||| || Sbjct 555968 TTGTCTCAATGGCATTAAATAGATATTCCTTTTCTTTCTCATC--TCTG--ATATATGTT 556023 Query 4827 TCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAA 4886 || || |||| ||||||||||| || |||| |||||| || ||||| ||||| || ||| Sbjct 556024 TCGATAAGTAAACTATACATTTCCGAGTGTACATTTTCCATGGCAATTTGAAACCCATAA 556083 Query 4887 AAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTT 4946 ||||| | ||||| |||| |||||| || | |||||| ||| ||||| || || || Sbjct 556084 AAGCAACGTGCTTCGGTTATTTGAACCTCTTGGGAAAATCGTTCCACTAAATTCTCATTA 556143 Query 4947 ACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCA 5006 || ||||| || || |||||||| |||||||| || || ||||| | ||||| || Sbjct 556144 ACAATACCATCGGATGCCGCAAAAAAAGCCAAAACGTGTGAAATAAAATGACGTTCGCCA 556203 Query 5007 -GGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCA 5065 ||||| ||||| | | | |||||||| | ||||||||||| ||||||| Sbjct 556204 TTACTTAA-CCGATTCCAATCGTCGATATCTTTAGAGAGGTCAACTTCTTCTGCAGTCCA 556262 Query 5066 AAACGACGCTTCCGC 5080 ||| || |||||||| Sbjct 556263 AAAAGAGGCTTCCGC 556277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427029166477358