Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020 15-01-15] 3,926 sequences; 380,104,241 total letters Query= NC_031129.1 Length=103445 Score E Sequences producing significant alignments: (Bits) Value seq861 174 1e-38 seq1838 82.4 5e-11 >seq861 Length=102403 Score = 174 bits (192), Expect = 1e-38 Identities = 279/396 (70%), Gaps = 6/396 (2%) Strand=Plus/Plus Query 96700 ATAGTTATCAAACCGTGAGTATTGGCCGTTAAAAGCCAATCTCACCGTGCCAATTGGGCC 96759 ||| |||||||| | || ||| || ||||||| | | | || || ||||| || Sbjct 31127 ATAATTATCAAATCTAGACCATTTTCCATTAAAAGTTAGACGAATTGTTCCGATTGGTCC 31186 Query 96760 ATTTCGTTGCTTTCCGATAATTACCTCGGCAATGCCCTTCATTTCGCTATCCGGGTGATA 96819 || ||||| ||||| | ||| | || || || || || | || |||| ||||| Sbjct 31187 GTTACGTTGTTTTCCTAAAATAATTTCTGCTATCCCTTTTGTCTCACTATTTTCATGATA 31246 Query 96820 AACTTCGTCGCGATACAAAAACATGATCAGGTCTGCGTCCTGCTCAATTGCTCCTGATTC 96879 ||||||||| ||||| | |||||| || | ||||| || ||||| |||| ||| ||||| Sbjct 31247 AACTTCGTCACGATAGATAAACATAATAACATCTGCATCTTGCTCGATTGATCCAGATTC 31306 Query 96880 ACGTAAATCTGAATTTACCGGTCGTTTGTCCGCACGCTGTTC-AAGCGATCGATTAAGTT 96938 | ||||||||||||||| |||| ||| || | | ||||| || | | |||||||| | Sbjct 31307 TCTTAAATCTGAATTTACTGGTCTTTTATCAGATCTTTGTTCTAAACTA-CGATTAAGCT 31365 Query 96939 GTGACAATGCCACCACCGGTACTTGTAATTCCTTCGCCAACGCCTTCAGTGAGCGAGAAA 96998 | ||||| || | || || ||||| | ||| || ||||| || || | || | |||| Sbjct 31366 GCGACAAAGCAATAACTGGAACTTGAAGTTCTTTTGCCAAGGCTTTTAAAGATCTTGAAA 31425 Query 96999 TCTCGGCAATTTCCAGCGTTCGGTTATCTTGCAGCTCCGGGACGC--GCATAAGTTGCAG 97056 | || |||||||| | |||| ||| || | || | ||| |||||||||| || Sbjct 31426 TTTCTGCAATTTCTAAAGTTCTATTA--TTAAATATCGTAGGCGCATGCATAAGTTGAAG 31483 Query 97057 GTAGTCGATCATAATCATGCTCAAACCACCATTTTC 97092 || || |||||||| | || ||||| ||| ||| Sbjct 31484 ATAATCTATCATAATTAAACTTAAACCTTCATGTTC 31519 Score = 95.1 bits (104), Expect = 8e-15 Identities = 97/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 44803 TCCCTTCGATGTAGACCTGAGAACCTTTTCGTAAATACTCACTCGCAATTTCAGCAAGTT 44862 |||||||||| || || ||||| |||||||||||||| || | || |||||||| | || Sbjct 30771 TCCCTTCGATATATACTTGAGATCCTTTTCGTAAATATTCTCCGGCTATTTCAGCTAATT 30830 Query 44863 TTCCGAACAAAACGACTTTATGCCATTCTGTTTGCTCTTTCTGTTGGCCCGTTTGCTTGT 44922 |||| || | ||| ||| | |||||||| |||| ||||| || || || | || | Sbjct 30831 TTCCAAAAATAACTACTCTGTGCCATTCGGTTTTTTCTTTGATTTCTCCGGTATTTTTAT 30890 Query 44923 CGCGCCA 44929 ||||||| Sbjct 30891 CGCGCCA 30897 >seq1838 Length=5037 Score = 82.4 bits (90), Expect = 5e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 98319 TGGCCCCTACCGGACTTGAACCGGTGACCGTGCGATTATGAGTCGCCAGCTCTAACCACT 98378 |||||| | | ||| ||||||| | |||| |||||||||||||||| ||||| ||| || Sbjct 3958 TGGCCCTTGCTGGATTTGAACCAGCGACCAAGCGATTATGAGTCGCCTGCTCTTACCTCT 4017 Query 98379 GAGCTAAAGGGCC 98391 ||||||||||||| Sbjct 4018 GAGCTAAAGGGCC 4030 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 330883367093716