Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020
15-01-15] 3,926 sequences; 380,104,241 total letters
Query= NC_031761.1
Length=131855
Score E
Sequences producing significant alignments: (Bits) Value
seq394 129 5e-25
seq180 120 3e-22
seq110 114 1e-20
seq343 104 2e-17
>seq394
Length=301216
Score = 129 bits (142), Expect = 5e-25
Identities = 166/229 (72%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159
||||| || ||||| ||||| ||||| || |||||||| || | ||| ||||||
Sbjct 217246 ATGCAGATCTTTGTAAAAACTTTGACAGGTAAAACCATCACTTTAGAAGTAGAACCCTCG 217187
Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219
||| || ||| | || ||| ||||||| |||||||||||| |||| ||||||
Sbjct 217186 GATACTATTGAGAACGTTAAAGCAAAAATTCAAGACAAAGAAGGCATTCCTCCAGATCAA 217127
Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279
|| | | |||| ||| || || || |||||||| || || | || ||||||
Sbjct 217126 CAGCGCTTAATTTTTGCCGGTAAGCAGCTGGAAGATGGCCGCACCTTGTCAGACTATAAT 217067
Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111328
|| ||||| |||||||| || ||||| ||||| ||||| ||||| ||||
Sbjct 217066 ATCCAAAAGGAATCTACGCTCCATTTGGTGTTACGTCTTCGCGGAGGCA 217018
>seq180
Length=539930
Score = 120 bits (132), Expect = 3e-22
Identities = 173/243 (71%), Gaps = 1/243 (0%)
Strand=Plus/Minus
Query 111097 AAAATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCC 111156
|| ||||| |||||||| ||||| | || ||||| ||||| || | || ||||||
Sbjct 121605 AATATGCAGATTTTTGTAAAAACCCTAACGGGCAAGACCATCACTCTTGAGGTCGAACCC 121546
Query 111157 AGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGAT 111216
|| || | | | |||||| || ||| |||||||| || |||| |||
Sbjct 121545 TCGGACACTATCGAAAATGTAAAAGCCAAGATTCAGGACAAAGAGGGAATTCCACCCGAC 121486
Query 111217 CAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 111276
|| ||| | | |||| || || || |||||||||||| | || || ||||||||
Sbjct 121485 CAGCAACGATTGATTTTCGCTGGAAAGCAATTGGAAGATGGTCGCACATTGTCCGATTAT 121426
Query 111277 AATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCAATAAATAA 111336
||||| ||||||||||| ||| ||||| | ||||||||| |||| ||||| | ||| ||
Sbjct 121425 AATATTCAAAAAGAATCCACATTACATCTTGTGTTGCGTTTGCGAGGTGG-AGCAAAAAA 121367
Query 111337 ACG 111339
|||
Sbjct 121366 ACG 121364
>seq110
Length=875010
Score = 114 bits (126), Expect = 1e-20
Identities = 168/238 (71%), Gaps = 0/238 (0%)
Strand=Plus/Plus
Query 111089 AGAGTTTAAAAATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAA 111148
||| | ||||||||||||||||||| ||||| | || |||||||| ||||| |||||
Sbjct 86194 AGAATATAAAAATGCAAATTTTTGTTAAAACTCTTACTGGCAAAACTATTACTTTGGAAG 86253
Query 111149 CGGAACCCAGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTC 111208
|| || ||| || ||| | || || |||||| || ||||||||| |||
Sbjct 86254 TTGAGCCTTCCGACACTATTGAAAATGTCAAGGCCAAAATTCAGGATAAAGAAGGCATTC 86313
Query 111209 CCGTCGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGG 111268
| ||||||||| | | |||| || || ||||||||||||||| ||| |
Sbjct 86314 CTCCAGATCAACAACGTTTGATTTTCGCTGGTAAACAATTGGAAGATGGGCGGACTTTAT 86373
Query 111269 CCGATTATAATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326
| |||||||| |||||||| || || || | || || || | ||||| || |||||
Sbjct 86374 CGGATTATAACATACAAAAGGAGTCGACCTTGCACTTGGTACTTCGTCTCCGTGGTGG 86431
>seq343
Length=430003
Score = 104 bits (114), Expect = 2e-17
Identities = 167/239 (70%), Gaps = 1/239 (0%)
Strand=Plus/Minus
Query 111089 AGAGTTTAAAAA-TGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAA 111147
||| |||||||| ||||||| || || ||||| || || |||||||| || || |||||
Sbjct 57715 AGATTTTAAAAAATGCAAATCTTCGTAAAAACATTAACTGGCAAAACTATCACTTTGGAA 57656
Query 111148 ACGGAACCCAGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTT 111207
||||| ||| || | | | || ||| || ||| ||||||||||| ||
Sbjct 57655 GTTGAACCGTCAGATACTATCGAAAATGTTAAAGCCAAGATTCAAGACAAAGAAGGTATT 57596
Query 111208 CCCGTCGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATG 111267
|| || || ||| | | |||| ||| ||||| ||| ||||||| || ||
Sbjct 57595 CCTCCAGACCAGCAACGTTTGATTTTTGCCGGCAAGCAACTGGAAGACGGACGCACCTTG 57536
Query 111268 GCCGATTATAATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326
||||||||||||| || || || || || | ||||| || | ||||||||||||||
Sbjct 57535 TCCGATTATAATATTCAGAAGGAGTCAACCTTGCATTTGGTCCTACGTCTGCGCGGTGG 57477
Score = 86.0 bits (94), Expect = 5e-12
Identities = 139/200 (70%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 111127 GGCAAAACCATTACCGTGGAAACGGAACCCAGCGATTCTGTTGGCCAGGTAAAACAAAAA 111186
|| |||||||| || ||||| ||||| ||| || | | | || ||| ||||
Sbjct 45886 GGAAAAACCATCACTTTGGAAGTAGAACCGTCGGATACTATCGAAAACGTTAAAGCAAAA 45827
Query 111187 ATTGCCGACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTATGCGGGCAAACAA 111246
|| ||||| ||||| |||| |||||||| | | |||| || |||||||||
Sbjct 45826 ATCCAAGACAAGGAAGGTATTCCTCCAGATCAACAGCGTTTAATTTTCGCTGGCAAACAA 45767
Query 111247 TTGGAAGATTCTAAAACTATGGCCGATTATAATATACAAAAAGAATCTACACTACATTTA 111306
||||||||| || || | ||||| || |||||||| |||||||| || || ||
Sbjct 45766 TTGGAAGATGGCCGCACATTGTCTGATTACAACATACAAAAGGAATCTACTCTTCACTTG 45707
Query 111307 GTGTTGCGTCTGCGCGGTGG 111326
|| ||||||| ||||| ||
Sbjct 45706 GTACTGCGTCTCCGCGGAGG 45687
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 421791017124976
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |