Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020 15-01-15] 3,926 sequences; 380,104,241 total letters Query= NC_031761.1 Length=131855 Score E Sequences producing significant alignments: (Bits) Value seq394 129 5e-25 seq180 120 3e-22 seq110 114 1e-20 seq343 104 2e-17 >seq394 Length=301216 Score = 129 bits (142), Expect = 5e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| || ||||| ||||| ||||| || |||||||| || | ||| |||||| Sbjct 217246 ATGCAGATCTTTGTAAAAACTTTGACAGGTAAAACCATCACTTTAGAAGTAGAACCCTCG 217187 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| || ||| | || ||| ||||||| |||||||||||| |||| |||||| Sbjct 217186 GATACTATTGAGAACGTTAAAGCAAAAATTCAAGACAAAGAAGGCATTCCTCCAGATCAA 217127 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || | | |||| ||| || || || |||||||| || || | || |||||| Sbjct 217126 CAGCGCTTAATTTTTGCCGGTAAGCAGCTGGAAGATGGCCGCACCTTGTCAGACTATAAT 217067 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111328 || ||||| |||||||| || ||||| ||||| ||||| ||||| |||| Sbjct 217066 ATCCAAAAGGAATCTACGCTCCATTTGGTGTTACGTCTTCGCGGAGGCA 217018 >seq180 Length=539930 Score = 120 bits (132), Expect = 3e-22 Identities = 173/243 (71%), Gaps = 1/243 (0%) Strand=Plus/Minus Query 111097 AAAATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCC 111156 || ||||| |||||||| ||||| | || ||||| ||||| || | || |||||| Sbjct 121605 AATATGCAGATTTTTGTAAAAACCCTAACGGGCAAGACCATCACTCTTGAGGTCGAACCC 121546 Query 111157 AGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGAT 111216 || || | | | |||||| || ||| |||||||| || |||| ||| Sbjct 121545 TCGGACACTATCGAAAATGTAAAAGCCAAGATTCAGGACAAAGAGGGAATTCCACCCGAC 121486 Query 111217 CAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 111276 || ||| | | |||| || || || |||||||||||| | || || |||||||| Sbjct 121485 CAGCAACGATTGATTTTCGCTGGAAAGCAATTGGAAGATGGTCGCACATTGTCCGATTAT 121426 Query 111277 AATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCAATAAATAA 111336 ||||| ||||||||||| ||| ||||| | ||||||||| |||| ||||| | ||| || Sbjct 121425 AATATTCAAAAAGAATCCACATTACATCTTGTGTTGCGTTTGCGAGGTGG-AGCAAAAAA 121367 Query 111337 ACG 111339 ||| Sbjct 121366 ACG 121364 >seq110 Length=875010 Score = 114 bits (126), Expect = 1e-20 Identities = 168/238 (71%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 111089 AGAGTTTAAAAATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAA 111148 ||| | ||||||||||||||||||| ||||| | || |||||||| ||||| ||||| Sbjct 86194 AGAATATAAAAATGCAAATTTTTGTTAAAACTCTTACTGGCAAAACTATTACTTTGGAAG 86253 Query 111149 CGGAACCCAGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTC 111208 || || ||| || ||| | || || |||||| || ||||||||| ||| Sbjct 86254 TTGAGCCTTCCGACACTATTGAAAATGTCAAGGCCAAAATTCAGGATAAAGAAGGCATTC 86313 Query 111209 CCGTCGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGG 111268 | ||||||||| | | |||| || || ||||||||||||||| ||| | Sbjct 86314 CTCCAGATCAACAACGTTTGATTTTCGCTGGTAAACAATTGGAAGATGGGCGGACTTTAT 86373 Query 111269 CCGATTATAATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 | |||||||| |||||||| || || || | || || || | ||||| || ||||| Sbjct 86374 CGGATTATAACATACAAAAGGAGTCGACCTTGCACTTGGTACTTCGTCTCCGTGGTGG 86431 >seq343 Length=430003 Score = 104 bits (114), Expect = 2e-17 Identities = 167/239 (70%), Gaps = 1/239 (0%) Strand=Plus/Minus Query 111089 AGAGTTTAAAAA-TGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAA 111147 ||| |||||||| ||||||| || || ||||| || || |||||||| || || ||||| Sbjct 57715 AGATTTTAAAAAATGCAAATCTTCGTAAAAACATTAACTGGCAAAACTATCACTTTGGAA 57656 Query 111148 ACGGAACCCAGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTT 111207 ||||| ||| || | | | || ||| || ||| ||||||||||| || Sbjct 57655 GTTGAACCGTCAGATACTATCGAAAATGTTAAAGCCAAGATTCAAGACAAAGAAGGTATT 57596 Query 111208 CCCGTCGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATG 111267 || || || ||| | | |||| ||| ||||| ||| ||||||| || || Sbjct 57595 CCTCCAGACCAGCAACGTTTGATTTTTGCCGGCAAGCAACTGGAAGACGGACGCACCTTG 57536 Query 111268 GCCGATTATAATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 ||||||||||||| || || || || || | ||||| || | |||||||||||||| Sbjct 57535 TCCGATTATAATATTCAGAAGGAGTCAACCTTGCATTTGGTCCTACGTCTGCGCGGTGG 57477 Score = 86.0 bits (94), Expect = 5e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 111127 GGCAAAACCATTACCGTGGAAACGGAACCCAGCGATTCTGTTGGCCAGGTAAAACAAAAA 111186 || |||||||| || ||||| ||||| ||| || | | | || ||| |||| Sbjct 45886 GGAAAAACCATCACTTTGGAAGTAGAACCGTCGGATACTATCGAAAACGTTAAAGCAAAA 45827 Query 111187 ATTGCCGACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTATGCGGGCAAACAA 111246 || ||||| ||||| |||| |||||||| | | |||| || ||||||||| Sbjct 45826 ATCCAAGACAAGGAAGGTATTCCTCCAGATCAACAGCGTTTAATTTTCGCTGGCAAACAA 45767 Query 111247 TTGGAAGATTCTAAAACTATGGCCGATTATAATATACAAAAAGAATCTACACTACATTTA 111306 ||||||||| || || | ||||| || |||||||| |||||||| || || || Sbjct 45766 TTGGAAGATGGCCGCACATTGTCTGATTACAACATACAAAAGGAATCTACTCTTCACTTG 45707 Query 111307 GTGTTGCGTCTGCGCGGTGG 111326 || ||||||| ||||| || Sbjct 45706 GTACTGCGTCTCCGCGGAGG 45687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421791017124976