Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020 15-01-15] 3,926 sequences; 380,104,241 total letters Query= NC_031946.1 Length=40443 Score E Sequences producing significant alignments: (Bits) Value seq861 96.9 9e-16 >seq861 Length=102403 Score = 96.9 bits (106), Expect = 9e-16 Identities = 225/337 (67%), Gaps = 3/337 (1%) Strand=Plus/Plus Query 26641 CCAAGCATTTGCATGGTTCCACCAACGCCAACGATGACTTCGGTAGTGAACCGATCCTGT 26700 || ||||||||||| | ||| || ||| || || ||||| ||| | || ||| || Sbjct 30677 CCGAGCATTTGCATAGCACCATTAATGCCTACAATAACTTCTGTAATATACTTATCTTGA 30736 Query 26701 CTGCTTTGATCCTGCCATTTTCTTGTCCGCAATTTGCCTTCAAGATAAACCTCAGAACCT 26760 | |||| || |||||||||||||| | || | ||||| | ||| || | ||| ||| Sbjct 30737 CCATTTTGGTCTTGCCATTTTCTTGTTTGTAAGCTCCCTTCGATATATACTTGAGATCCT 30796 Query 26761 TTTCGCAGATACTCGCTGGCAATTTCTGCCAGTTTCCCGCTCATTACCACACGGTGCCAC 26820 ||||| | ||| || | ||| ||||| || | ||| || || || || | |||||| Sbjct 30797 TTTCGTAAATATTCTCCGGCTATTTCAGCTAATTTTCCAAAAATAACTACTCTGTGCCAT 30856 Query 26821 TCCGTCTGCTCCTTTTGCTCTCCAGTTTGCTTATCACGCCATTGTTCTGACGTAGCAACT 26880 || || | || || ||||| || | ||||| ||||| ||| || || |||| Sbjct 30857 TCGGTTTTTTCTTTGATTTCTCCGGTATTTTTATCGCGCCAACTTTCAGATGTTGCAAGC 30916 Query 26881 GTAAGGTTTGCAAATGCCGTTCC-TGATGGGTGAATATCTGATTTCTGGATCATGCCCAA 26939 || | |||| || || |||| | | | || || | | ||||||| ||||| | Sbjct 30917 GTGATATTTGTAACGGCACTTCCATTAGGAATG--TAGCGTACATCTGGATTTTGCCCTA 30974 Query 26940 GGCGACCAATAATGATCACCTTATTTACGCCTCTGCT 26976 | ||||| | || || ||||| | ||||| || Sbjct 30975 AATGTCCAATTAAAATGACTTTATTAATTCCTCTACT 31011 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 129289972058860