Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020 15-01-15] 3,926 sequences; 380,104,241 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq158 286 4e-72 seq832 95.1 1e-14 seq4 84.2 2e-11 seq296 82.4 8e-11 >seq158 Length=613782 Score = 286 bits (316), Expect = 4e-72 Identities = 476/688 (69%), Gaps = 0/688 (0%) Strand=Plus/Plus Query 23343 ATCTGCTACAAATTCAATATATTGACACATCAAATCATAGTTTATACCTATTAGTTTTAC 23402 ||| || ||| |||| ||||||| |||||| || ||| || || |||| | || Sbjct 555579 ATCGGCAACATATTCTATATATTTACACATACTTTCGCTGTTCATGCCAATTAAGTCGAC 555638 Query 23403 TGGAATCGCATCATATAAGAATAGTTTTTCAATGGAAACAGCATCTTTAATTATTTGAAC 23462 ||| | || || || || ||||||||| ||| |||||| | ||||||| | Sbjct 555639 TGGTAAGGCCTCTGTCAAAAACTCTTTTTCAATTTTAACGGCATCTGTTATTATTTCCAA 555698 Query 23463 AATAACTTCTTCACTAGGTGGATATTTTAAATACTTAAACAATAAACATGCAAAATCACA 23522 ||| ||||| || ||| | | | |||| ||||||| ||| ||||| ||||| Sbjct 555699 AATCCGTTCTTTGCTCGGTTTTTGTATCAAATGTTTAAACATTAATACCGCAAATTCACA 555758 Query 23523 ATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCC 23582 || | ||||||||| | |||| ||||||||| || ||||| |||||||||| ||| Sbjct 555759 GTGCAAGCCTTCATCGCGTGATATCATTTCATTAGAGAACGTTAAACCTGGCATTATTCC 555818 Query 23583 TCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGC 23642 ||||| || | ||||||||| | ||| || || |||||| ||||| || || || Sbjct 555819 ACGTTTCTTTAGCCAAAATATCGAAGCGAAGCTCCCACTAAAGAATATACCTTCGACGGC 555878 Query 23643 CGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAATCAGAAATCCAtttttttGT 23702 || || || | || |||| ||| || | || || || ||||| | || Sbjct 555879 AGCGAAAGCTATAACACGTTCACCGAAATTAGCCGAATGCGATGATATCCAAGCTAGTGC 555938 Query 23703 CCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTGCTTTTAAGAGAAAAGTTTT 23762 ||| | |||||| || || | ||||| ||||| || || || ||| | || Sbjct 555939 CCATTCCGCCTTCTTCTTAACCAATGGCATTGTCTCAATGGCATTAAATAGATATTCCTT 555998 Query 23763 TTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTATACATTTCAGAATGAATATT 23822 ||||| | |||| | |||||||| || || ||||||||||||||||| || || | ||| Sbjct 555999 TTCTTTCTCATCTCTGATATATGTTTCGATAAGTAAACTATACATTTCCGAGTGTACATT 556058 Query 23823 TTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGACAATTGAACATCATTAAA 23882 ||| || ||||| |||||||||||||| || | ||||| | | |||||| || | | Sbjct 556059 TTCCATGGCAATTTGAAACCCATAAAAGCAACGTGCTTCGGTTATTTGAACCTCTTGGGA 556118 Query 23883 AAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAGCAGCAAAGAAAGCAAGAAC 23942 ||||| || ||||||| || |||||||||||||| || ||||| ||||| | ||| Sbjct 556119 AAATCGTTCCACTAAATTCTCATTAACAATACCATCGGATGCCGCAAAAAAAGCCAAAAC 556178 Query 23943 ATATTTTATAAAATGTCTTTCATCAGTTGATAATTTTTTCCAATCATTAATATCTTTTGA 24002 | | |||||||| | ||| || | ||| |||||||| | |||||||| || Sbjct 556179 GTGTGAAATAAAATGACGTTCGCCATTACTTAACCGATTCCAATCGTCGATATCTTTAGA 556238 Query 24003 TAAATCAACTTCATCAACTGTCCAAAAA 24030 | |||||||| || | ||||||||| Sbjct 556239 GAGGTCAACTTCTTCTGCAGTCCAAAAA 556266 >seq832 Length=79107 Score = 95.1 bits (104), Expect = 1e-14 Identities = 82/102 (80%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 139428 AGGTGTCCTACATACAAAATTTTGGATTGTTGATAATAAACATATATATATTGGAAGTGC 139487 ||| ||| ||||||||||||| ||| |||| |||||||| ||| | ||| | |||||||| Sbjct 62456 AGGAGTCTTACATACAAAATTATGGGTTGTAGATAATAAGCATTTTTATCTGGGAAGTGC 62515 Query 139488 TAACATGGACTGGCGATCACTAACTCAAGTAAAAGAATTAGG 139529 || ||||| ||| |||| | || ||||| ||||| ||||| Sbjct 62516 GAATATGGATTGGAGATCTTTGACCCAAGTTAAAGAGTTAGG 62557 >seq4 Length=3302515 Score = 84.2 bits (92), Expect = 2e-11 Identities = 75/94 (80%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 139428 AGGTGTCCTACATACAAAATTTTGGATTGTTGATAATAAACATATATATATTGGAAGTGC 139487 ||| ||| ||||||||||||| ||| |||| |||||||| ||| | ||| | |||||||| Sbjct 275485 AGGAGTCTTACATACAAAATTATGGGTTGTAGATAATAAGCATTTTTATCTGGGAAGTGC 275426 Query 139488 TAACATGGACTGGCGATCACTAACTCAAGTAAAA 139521 || ||||| ||| |||| | || ||||| ||| Sbjct 275425 GAATATGGATTGGAGATCTTTGACCCAAGTCAAA 275392 >seq296 Length=768854 Score = 82.4 bits (90), Expect = 8e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 139428 AGGTGTCCTACATACAAAATTTTGGATTGTTGATAATAAACATATATATATTGGAAGTGC 139487 ||| ||| ||||||||||||| ||| |||| |||||||| ||| | ||| | |||||||| Sbjct 715623 AGGAGTCTTACATACAAAATTATGGGTTGTAGATAATAAGCATTTTTATCTGGGAAGTGC 715564 Query 139488 TAACATGGACTGGCGATCACTAACTCAAGTAAAAGAAT 139525 || ||||| ||| |||| | || ||| ||||||| Sbjct 715563 GAATATGGATTGGAGATCTTTGACCTAAGGCAAAGAAT 715526 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521462407976400