Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020 15-01-15] 3,926 sequences; 380,104,241 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq343 105 5e-18 seq394 95.1 9e-15 >seq343 Length=430003 Score = 105 bits (116), Expect = 5e-18 Identities = 169/239 (71%), Gaps = 3/239 (1%) Strand=Plus/Plus Query 44102 TATTT-CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTT 44160 ||||| |||||| || | || | ||| |||| || | ||| || || || ||||| Sbjct 48383 TATTTGCATTCCACCGCGGAGACGCAATACCAAATGTAATGTGGATTCTTTCTGTATGTT 48442 Query 44161 GTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTG 44220 |||||| | | ||| |||| |||| ||| || || ||||||||||||||||| || Sbjct 48443 GTAATCAGACAACGTGCGGCCGTCTTCCAACTGTTTTCCAGCAAAGATCAAACGCTGTTG 48502 Query 44221 ATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATG-TTCCTATGGTGTCGG 44279 |||| ||| | ||||||||| || || || ||||| || | || | || || || | Sbjct 48503 GTCTGGAGGAATACCTTCCTTGTCTTGGAT-TTTTGCTTTAACGTTTTCGATAGTATCCG 48561 Query 44280 CGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||||| || |||| || || || || || || | ||||| || || ||||||||| Sbjct 48562 ACGATTCTACTTCCAAAGTGATGGTTTTACCGGTCAAAGTCTTAACAAATATTTGCATG 48620 Score = 96.9 bits (106), Expect = 2e-15 Identities = 141/194 (73%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 44146 CTCCTTTTGGATGTTGTAATCGG-CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAA 44204 |||||| || || || ||||||| | || || || |||| ||||| ||||| ||||||| Sbjct 57512 CTCCTTCTGAATATTATAATCGGACAAGGTG-CGTCCGTCTTCCAGTTGCTTGCCGGCAA 57570 Query 44205 AGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATG 44264 | |||||||| ||||| |||| ||| | |||||| || || ||||| |||| || Sbjct 57571 AAATCAAACGTTGCTGGTCTGGAGGAATACCTTCTTTGTCTTGAATCTTG-GCTTTAACA 57629 Query 44265 TTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTC 44323 || | || || || | | ||| || |||| || || || || || || | || || Sbjct 57630 TTTTCGATAGTATCTGACGGTTCAACTTCCAAAGTGATAGTTTTGCCAGTTAATGTTTTT 57689 Query 44324 ACGAAGATTTGCAT 44337 |||||||||||||| Sbjct 57690 ACGAAGATTTGCAT 57703 Score = 87.8 bits (96), Expect = 1e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 || || || |||||||| || | |||| ||| | | |||| ||| || || |||||| Sbjct 48657 TCTTTCTGAATGTTGTAGTCAGAGAGTGTGCGGCCATTTTCCAACTGTTTGCCAGCAAAG 48716 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT 44266 |||||||| || ||||||| || ||||| | |||| | | | || | || || || Sbjct 48717 ATCAAACGTTGTTGATCTGGTGGGACACCCT-CTTTATCTTGAATTTTAGTTTTAACATT 48775 Query 44267 C-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | | || || |||| | || ||||||| || || || ||||| || | |||||||| Sbjct 48776 CTCAATAGTATCGGATGGCTCAACCTCCAAGGTGATAGTTTTTCCAGTCAATGTCTTCAC 48835 Query 44326 GAAGATTTGCAT 44337 ||| || ||||| Sbjct 48836 GAATATCTGCAT 48847 >seq394 Length=301216 Score = 95.1 bits (104), Expect = 9e-15 Identities = 153/215 (71%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 44126 AACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC-GGCGAGTTGGCGCTCGTC 44184 ||||||| || ||||| ||||||||||| || || || | | || | ||| | || Sbjct 217035 AACACCAAATGGAGCGTAGATTCCTTTTGGATATTATAGTCTGACAAGGT-GCGGCCATC 217093 Query 44185 GTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTC 44244 ||||||||||| |||||||| || || ||||| ||||||| ||| | |||| |||| Sbjct 217094 TTCCAGCTGCTTACCGGCAAAAATTAAGCGCTGTTGATCTGGAGGAATGCCTT-CTTTGT 217152 Query 44245 CGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCG 44303 | | | || ||||| || |||| | || || || | || ||| || || | || || | Sbjct 217153 CTTGAATTTTTGCTTTAACGTTCTCAATAGTATCCGAGGGTTCTACTTCTAAAGTGATGG 217212 Query 44304 TCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | || || || | || || || ||||| |||||| Sbjct 217213 TTTTACCTGTCAAAGTTTTTACAAAGATCTGCATG 217247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359973175134342