Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020 15-01-15] 3,926 sequences; 380,104,241 total letters Query= NC_033423.1 Length=208501 Score E Sequences producing significant alignments: (Bits) Value seq613 136 5e-27 >seq613 Length=257901 Score = 136 bits (150), Expect = 5e-27 Identities = 215/304 (71%), Gaps = 8/304 (3%) Strand=Plus/Minus Query 156164 AAACAATCGTCTGACGTTAGCTTCCGATTCACCCACATATTTGTTTAATAATTCAGGACC 156223 |||||| ||||| | |||||||| ||||| || |||||||| | ||||| || ||||| Sbjct 18253 AAACAACCGTCTTATATTAGCTTCGGATTCGCCGACATATTTATCTAATACTTGCGGACC 18194 Query 156224 GTTAACTATTTTGACGGGTCGTG---ATTTAAAAGCTTGAGCGATACAGCGAGCCATTAA 156280 || || ||||| ||| || | ||| || | ||| | || |||||||||||| Sbjct 18193 ATTTACAATTTT--CGGCTCACGGGCATTCAACATATTGC-CTATTTGGCGAGCCATTAA 18137 Query 156281 TGTTTTACCGCACCCAGGAGGTCCGTATAACAATACTCCTTTTATATGTTTACAACCTAA 156340 ||||| ||| ||||||||||| || ||||| | ||||| | |||||| ||||| | Sbjct 18136 GGTTTTGCCGGTACCAGGAGGTCCATACAACAAAATACCTTTGACATGTTTGCAACCCAG 18077 Query 156341 TTTTTCAGTTATTTCTACCGGAACTGATCTGGAAGCAAATGCTCTTCGAAAAATGAGAGA 156400 | |||| | ||| |||| ||| || ||||| || | || ||||| | Sbjct 18076 CTGTTCAACCACTTCGGGAGGAAAGACTCTTGAGGCAAAAGCACGACGGAAAATAGCATT 18017 Query 156401 AAATTCTTTATCCAATCCCCCCACACCCATTTCCTCAAAATTCCAAT--TTATAGATATT 156458 |||||||||||||| || || | |||||||| |||||| ||||| || |||| | Sbjct 18016 GAATTCTTTATCCAAGCCGCCGATACCCATTTTGCCAAAATCCCAATCAGGATTGATAAT 17957 Query 156459 TGAC 156462 |||| Sbjct 17956 TGAC 17953 Score = 111 bits (122), Expect = 2e-19 Identities = 224/331 (68%), Gaps = 6/331 (2%) Strand=Plus/Minus Query 155728 ATCGACTCAACGCCGTCGATTGAGCGGCGCGTACCAACCCTTCCAATTCAGCGCCGCTGT 155787 ||| | ||| || || ||||| || || ||||| || ||||||||||||||||||||| Sbjct 18757 ATCTATTCATAGCAGTAGATTGGGCAGCACGTACTAAGCCTTCCAATTCAGCGCCGCTGA 18698 Query 155788 AATTTTTAGTTTCAACGGCTATTTTATTTAAGTCTACGTCGGAAGCTAATATGTTGTGAG 155847 ||||||| || | || |||| || || || || ||| | | | || | Sbjct 18697 AATTTTTGGTAAGGGCAGCGATTTCTTTCGTATCCACATCTCCAGCAATTTTATTAAAAT 18638 Query 155848 ATTTCAT---TTTAGCAACGTGCACCTTTAAAATTTGAAGACGCCCCTTTTCATCGGGTA 155904 ||| ||| | ||| | |||| |||||| | | || ||| | || | Sbjct 18637 CGCGCATACGTTTCGT---GTGAATATTTAGAATTTGTACTCTTCCAACTTCGTTAGGCA 18581 Query 155905 ATCCAATTTCTATCTTCAATTCCAACCGCCCAGGTCTTAATAATGCTTCGTCAATTAAGT 155964 | | ||||| || | || |||||| || ||||| | || ||| || || ||||| | || Sbjct 18580 AACTGATTTCCATTTGCACTTCCAAACGGCCAGGGCGTAGTAAAGCCTCATCAATCATGT 18521 Query 155965 CGGGTCTGTTGGTCATACCTATGATTAAAATGTTGTTTAAAGATTCTACACCGTCTATTT 156024 | | | ||||||||||| || | |||||| || || || || || ||||| |||| Sbjct 18520 CACGGCGATTGGTCATACCAATAACTAAAATATTATTCAATTGCTCCACTCCGTCGATTT 18461 Query 156025 TAGACAATAATTGATTGACTACGGCGTCGTG 156055 ||| ||| |||||||| ||||| | |||||| Sbjct 18460 TAGCCAACAATTGATTAACTACAGTGTCGTG 18430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 667042463284560