Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020 15-01-15] 3,926 sequences; 380,104,241 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq180 163 7e-35 seq343 132 1e-25 seq394 129 1e-24 >seq180 Length=539930 Score = 163 bits (180), Expect = 7e-35 Identities = 162/210 (77%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| || ||||| || || || || || ||||| || ||||| ||| ||| ||| Sbjct 121599 CAGATTTTTGTAAAAACCCTAACGGGCAAGACCATCACTCTTGAGGTCGAACCCTCGGAC 121540 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || || ||| ||||||||||||||||| ||||| || || ||||||||| Sbjct 121539 ACTATCGAAAATGTAAAAGCCAAGATTCAGGACAAAGAGGGAATTCCACCCGACCAGCAA 121480 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | || ||||| ||||| || | |||||||| | || | |||||||||| | Sbjct 121479 CGATTGATTTTCGCTGGAAAGCAATTGGAAGATGGTCGCACATTGTCCGATTATAATATT 121420 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133 ||||||||||| ||| | |||||||| ||| Sbjct 121419 CAAAAAGAATCCACATTACATCTTGTGTTG 121390 >seq343 Length=430003 Score = 132 bits (146), Expect = 1e-25 Identities = 158/211 (75%), Gaps = 5/211 (2%) Strand=Plus/Minus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| |||| ||||| ||||| | || || ||||| ||||| | || || ||| Sbjct 57706 AAAATGC---AAATCTTCGTAAAAACATTAACTGGCAAAACTATCACTTTGGAAGTTGAA 57650 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 ||||| || ||||| || || ||| |||||||| ||||||||||| || ||||| Sbjct 57649 CCGTCAGATACTATCGAAAATGTTAAAGCCAAGATTCAAGACAAAGAAGGTATTCCTCCA 57590 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGA 178093 ||||||||||| | || || ||||| || || || ||||| ||| | || |||| |||| Sbjct 57589 GACCAGCAACGTTTGATTTTTGCCGGCAAGCAACTGGAAGACGGACGCAC-CTTGTCCGA 57531 Query 178094 TTATAACGTCCAAAAAGAATCAACACTGCAT 178124 |||||| | || || || ||||| ||||| Sbjct 57530 TTATAATATTCAGAAGGAGTCAACCTTGCAT 57500 Score = 86.0 bits (94), Expect = 2e-11 Identities = 122/169 (72%), Gaps = 2/169 (1%) Strand=Plus/Minus Query 177957 ATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGAC 178016 |||||| | || || || || ||||| || ||||| ||||| || ||||| || Sbjct 54432 ATCACCTTAGAAGTCGAGCCTTCCGACACAATTGAGAATGTCAAGGCTAAAATTCAAGAT 54373 Query 178017 AAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGAT 178076 || ||||||||||| || || || ||||| | || || ||||| ||||| || || || Sbjct 54372 AAGGAAGGAATCCCCCCAGATCAACAACGTTTGATTTTTGCCGGCAAACAACTGGAGGAC 54313 Query 178077 GGAAGGACTCTTG-CCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 ||| | || |||| ||||||| || | || || || ||||| ||||| Sbjct 54312 GGACGCAC-CTTGTCCGATTACAATATTCAGAAGGAGTCAACCTTGCAT 54265 >seq394 Length=301216 Score = 129 bits (142), Expect = 1e-24 Identities = 156/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || |||||| | ||||| ||||| ||||| | || || ||| ||| || Sbjct 217243 CAGATCTTTGTAAAAACTTTGACAGGTAAAACCATCACTTTAGAAGTAGAACCCTCGGAT 217184 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || |||||||| ||| ||| ||||| ||||||||||| || ||||| || || || Sbjct 217183 ACTATTGAGAACGTTAAAGCAAAAATTCAAGACAAAGAAGGCATTCCTCCAGATCAACAG 217124 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || | || || ||||| || ||||| |||||||| | || |||| | || ||||| | Sbjct 217123 CGCTTAATTTTTGCCGGTAAGCAGCTGGAAGATGGCCGCAC-CTTGTCAGACTATAATAT 217065 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTTT 178132 |||||| ||||| || || ||| | || || Sbjct 217064 CCAAAAGGAATCTACGCTCCATTTGGTGTT 217035 Score = 116 bits (128), Expect = 9e-21 Identities = 152/210 (72%), Gaps = 3/210 (1%) Strand=Plus/Minus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | || |||||||| || | || || ||||| ||||| | ||||| || Sbjct 217477 AAAATGC---AGATCTTCGTGAAGACATTGACTGGCAAAACTATCACTTTAGAGGTTGAG 217421 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 || ||||| || ||||| ||||| || ||||| || || ||||||||||| || Sbjct 217420 CCGTCTGACACTATTGAGAATGTCAAGGCTAAAATTCAAGATAAGGAAGGAATCCCGCCA 217361 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 || ||||| || | || || || ||||| || | || ||||| | |||||| | ||| Sbjct 217360 GATCAGCAGCGTTTAATTTTTGCTGGAAAGCAATTGGAGGATGGCCGTACTCTTTCGGAT 217301 Query 178095 TATAACGTCCAAAAAGAATCAACACTGCAT 178124 |||||| | || ||||| ||||| ||||| Sbjct 217300 TATAACATACAGAAAGAGTCAACTTTGCAT 217271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203670650063644