Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Habropoda_20laboriosa_20[refseq_20GCF_5F001263275.1_202015-08-13] 27,566 sequences; 296,954,667 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq59 161 1e-34 seq284 104 3e-17 >seq59 Length=4191719 Score = 161 bits (178), Expect = 1e-34 Identities = 202/275 (73%), Gaps = 4/275 (1%) Strand=Plus/Minus Query 53056 CTGAATAGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCT 53115 ||||||||| || || | | ||||| ||| || || || | || ||| | | ||| Sbjct 764808 CTGAATAGAACCGTTATTTGCTATAATTTCATTTTTCATGTCCTGATCCCAAAGATCTCT 764749 Query 53116 CTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCT 53175 || || | | | | | | ||| |||||||| |||||||| ||||||||||| ||||| Sbjct 764748 TTCAGTAAGATCCCGTAACAAATGAGGATTAACAACTTGAAACTCTCCAGACAAAACTCT 764689 Query 53176 CCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGC 53235 | || ||||||||| | ||||| ||||| | |||||||||||||| |||||||| || Sbjct 764688 TCTTGTATAAATATTATTAGTATAGGGTTCTATGGACTCATTATTTCCTAAAATTTGCGC 764629 Query 53236 AGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTG-- 53293 ||| ||||| || ||||||||||| | || ||| |||||||| || ||||| | Sbjct 764628 AGTAGATGCTGTTGGCATAGGTGCAATTAACAAAGAATTTCTAACTCC--ATGTTTAGCA 764571 Query 53294 ATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATC 53328 ||||| || |||| || |||||| ||| | ||| Sbjct 764570 ATTTTTTCCTTTAAAGCAGCCCAATCCCATAAATC 764536 Score = 104 bits (114), Expect = 3e-17 Identities = 202/294 (69%), Gaps = 16/294 (5%) Strand=Plus/Minus Query 53585 GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGTTTC---TGACAATT 53641 |||||||||| ||||||||||| | ||| |||||||||| | || |||||||| Sbjct 764153 GCTTCTGGAACTGGATAATAATTGACATCAATAATTTTATCCAAATTATAGGTGACAATT 764094 Query 53642 ACTTTGACCACATCCTTC--AGTTTGAGAAAATCAAA----TTGTC--CATCTATTACAA 53693 || ||| | ||| ||||| ||||||||| || | || |||||| Sbjct 764093 ---TTCGTCACCT--TTCGAAGTTTTTCAAAATCAAAAGTTTTATTAGCAGGATTTACAA 764039 Query 53694 ACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATT 53753 |||| |||| ||||| || |||| ||| || || || | |||| | | | || | Sbjct 764038 ACATATTCACAGCAATTGAAGCCAAATTGCATACAGCAATTTCATCTGGACTGGAGTACT 763979 Query 53754 GTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCT 53813 ||| || || ||||| | ||| ||||||||||| ||||||| |||||| ||||| | Sbjct 763978 GTACAATTTCTGTGCATAAATTGCTACACTTGATTGTTCCTATATTTTGATGATTTGATT 763919 Query 53814 TTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGG 53867 | || || ||| |||||||| ||| | || || || ||||||| |||| Sbjct 763918 TACGATTGCAGTGATCTTTATAAAGCATGTAAGGAGTTCCTGTTTCAACTTGGG 763865 Score = 100 bits (110), Expect = 3e-16 Identities = 120/159 (75%), Gaps = 3/159 (2%) Strand=Plus/Minus Query 53950 TTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGA 54009 |||||| || || |||||||||| || || |||||| |||| | || ||||| || | Sbjct 763504 TTCAAATTCATCACCCCAAACATCATCTAAACCAGGAGATTCGTGTGGGCACATTAAAGT 763445 Query 54010 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-A 54068 ||| || | ||| |||||||||||||| |||||||||||||| | ||| ||| | Sbjct 763444 CCAAATACCATTTTCCAAAACTCGTTTCATAAAAAGATCAGGAATCCATAAAGC-ATAGA 763386 Query 54069 ATAGATCTCTGGTTCTATGTTCCTCGTTTCCTG-TATTC 54106 ||| ||||| | ||||| ||| || || |||| ||||| Sbjct 763385 ATAATTCTCTTGCTCTATTTTCTTCTTTACCTGTTATTC 763347 Score = 89.7 bits (98), Expect = 6e-13 Identities = 171/250 (68%), Gaps = 4/250 (2%) Strand=Plus/Minus Query 54404 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 54463 ||||||||||| || | |||| | ||| ||| | || || ||||| || ||||| Sbjct 762895 CTAGACATTTGCTGTTGCTTAGTACATGCAGCAAAAAGAGTTGGTGAAGCATGTGTAAAA 762836 Query 54464 CATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATT 54523 | ||| || | | ||| || || || |||||| ||| ||||| ||| || Sbjct 762835 TAACGTTCTGATAAGAAATTATATGTTTCTATAGCTCTGTCAATATCATCACCATGGATA 762776 Query 54524 CCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTC 54583 | ||||| || | ||||||||||||||| || || ||||| | || | ||| || Sbjct 762775 GCAACTGCAACTCTCATTAACATGTGCTGTGGCCTCTCAACAACTTTTCCATATATCTTT 762716 Query 54584 AGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTT 54641 | || ||| | |||| | ||||| ||||||||||| ||||| ||||| |||| | Sbjct 762715 AATAAATAGCTTCTTTCAAGTGTTTTGAAACCAAAATAATTGTAACTGAAA--TCTCTAT 762658 Query 54642 CGTAAATAAT 54651 | ||||| || Sbjct 762657 CATAAATTAT 762648 >seq284 Length=1419496 Score = 104 bits (114), Expect = 3e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 24621 TTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 24680 ||||| | || ||||| |||||||||||||| || || ||||| ||||| ||||| | | Sbjct 889928 TTAGAAAGGTCTACTTCCTCCACTGTCCAAAAGGAGGCTTCTGCTTTTTTGTACATTTGC 889869 Query 24681 CAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGATTTTTTGCAAGGATT 24740 || |||||| | |||| || ||||||| |||||||||| |||||||| | || | | Sbjct 889868 CAAATGTCAGGCCATTGGATAGGAAAAACAACAAATCTACGTGGATTTTCTTTTAGCAGT 889809 Query 24741 GGTTC 24745 ||||| Sbjct 889808 GGTTC 889804 Score = 98.7 bits (108), Expect = 1e-15 Identities = 151/214 (71%), Gaps = 6/214 (3%) Strand=Plus/Minus Query 23949 CCCAATTCAGAAATCAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAA 24008 || ||||| || |||||| || || ||||| || |||||| ||| | || ||| Sbjct 890869 CCTAATTCTACAAGCAATCTGTCCGCAACAAATTCAATATATTGGCACATGAGTTTACAG 890810 Query 24009 TTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACC 24068 ||||| ||||| | || ||| || | ||| |||| | ||||||||||||||| |||| Sbjct 890809 TTCATGCCTATCATTTCAACGGGTAAAGCGTCAGTTAAAAATTCTTGTTCAATTTGGACC 890750 Query 24069 GCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGATAC---AATAAATGTTTA 24125 |||||| | ||||| ||| | || |||| ||| || | | | | |||||| Sbjct 890749 GCGTCTTTAATAATTGATGTGAC---GCGTTCATTCGAAGGTTTCTGTATGATGTGTTTA 890693 Query 24126 AACATCAAACATGCGAAATCGCAGTGTAGACCCT 24159 ||||| || ||||| |||||||| || | |||| Sbjct 890692 AACATTAAGCATGCAAAATCGCAATGCAATCCCT 890659 Score = 89.7 bits (98), Expect = 6e-13 Identities = 104/138 (75%), Gaps = 3/138 (2%) Strand=Plus/Minus Query 23789 TTAAAAGTCAACATCTAAAGAAAAATGATTGTCT-TCTTGA--GACATAACTCCCATTTT 23845 |||||||||| ||| | | ||||| | ||| | ||| | ||| |||||| ||| Sbjct 891104 TTAAAAGTCAGCATTAACTGTAAAATTGCTCTCTATTTTGTTTGCCATCACTCCCCATTT 891045 Query 23846 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTTC 23905 ||| ||||| || || ||| |||||||| || || |||||||| || || |||| ||| Sbjct 891044 TTGATATTCTCCAACTTTTTTCTCGAAAAAGTTCGTCTTACCTTCCAAAGAAATATGTTC 890985 Query 23906 CATGAAATCGGATGGATT 23923 |||||||||| ||||||| Sbjct 890984 CATGAAATCGAATGGATT 890967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593517018379680