Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Habropoda_20laboriosa_20[refseq_20GCF_5F001263275.1_202015-08-13] 27,566 sequences; 296,954,667 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq284 107 2e-18 >seq284 Length=1419496 Score = 107 bits (118), Expect = 2e-18 Identities = 145/202 (72%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 16488 TTTCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATAT 16547 ||||||| |||| |||||| ||||| |||| ||| ||||||||||| || | || Sbjct 890252 TTTCTTTAGCATCTGCAATATATGTATCGATTAACAAAGAGTACATTTCTGAGTGCACAT 890193 Query 16548 TCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTCAGAGT 16607 | |||||||| | ||||| ||||||||||| | || || | |||||| || || | Sbjct 890192 TTTCCATTGCAACTTGAAAGCCATAAAAGCAACGTGCCTCTGTTATTTGCACCTCCTGGC 890133 Query 16608 AAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGTA 16667 ||| | ||| | | ||||| || || |||||||| ||| |||||||| || | || Sbjct 890132 TAAATCGTTCAACAAGATTTTCATTGACAATTCCATCAGAAGCAGCAAAAAATGCTAATA 890073 Query 16668 TGTGTTTAATAAAAtttttttC 16689 ||| ||||| ||||| || Sbjct 890072 CATGTGATATAAATTTTTTCTC 890051 Score = 100 bits (110), Expect = 3e-16 Identities = 139/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 16286 AATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCA 16345 |||||||| |||||||| ||||||| || || | |||||| || || ||||| |||| Sbjct 890529 AATGTAAGGCCTGGCATAAGTCCTCTCTTCTTTAACCAAAAAATGGCAGCAAAACTACCA 890470 Query 16346 GAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAttt 16405 |||||| |||||||| ||||| |||||||||| | || || | || | || Sbjct 890469 CTAAAGAAAATACCTTCCACTGCAGCAAATGCAATTACACGTTCGGGAAAGGTAGCAGTT 890410 Query 16406 ttactttctatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCT 16465 | | | |||||| ||| |||||||| |||||| |||||| || || || Sbjct 890409 TCATGATTTATCCAATTTAATGCCCAATTAGCTTTTCTCGCAACACACGGCAAATTTTCA 890350 Query 16466 ATTGCATTAAATAAA 16480 || |||||||||||| Sbjct 890349 ATCGCATTAAATAAA 890335 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 15917 TCTTTTTTATTTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAA 15976 ||| |||| |||| ||| ||| | |||||||||||| | |||| | || || || || Sbjct 891073 TCTATTTTGTTTGCCATCACTCCCCATTTTTGATATTCTCCAACTTTTTTCTCGAAAAAG 891014 Query 15977 TTTGTTTTTCCTTCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGA 16029 || || || ||||| || ||||||| |||||| ||||| || ||||||| ||| Sbjct 891013 TTCGTCTTACCTTCCAAAGAAATATGTTCCATGAAATCGAATGGATTTTCTGA 890961 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462352629927600