Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Habropoda_20laboriosa_20[refseq_20GCF_5F001263275.1_202015-08-13]
27,566 sequences; 296,954,667 total letters
Query= NC_003027.1
Length=150773
Score E
Sequences producing significant alignments: (Bits) Value
seq284 102 8e-17
>seq284
Length=1419496
Score = 102 bits (112), Expect = 8e-17
Identities = 133/183 (73%), Gaps = 1/183 (1%)
Strand=Plus/Minus
Query 14454 CCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTA 14513
|||| ||||||| | || ||| |||||||| || | || |||||||| ||||| |
Sbjct 890254 CCTT-TCTTTAGCATCTGCAATATATGTATCGATTAACAAAGAGTACATTTCTGAGTGCA 890196
Query 14514 TGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCTG 14573
|||||||| || | ||||| |||||||| || | || |||| ||| |||||
Sbjct 890195 CATTTTCCATTGCAACTTGAAAGCCATAAAAGCAACGTGCCTCTGTTATTTGCACCTCCT 890136
Query 14574 AGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCA 14633
| ||||| ||| | | ||||||||| || || |||||| ||| ||||||||||| |
Sbjct 890135 GGCTAAATCGTTCAACAAGATTTTCATTGACAATTCCATCAGAAGCAGCAAAAAATGCTA 890076
Query 14634 ATA 14636
|||
Sbjct 890075 ATA 890073
Score = 98.7 bits (108), Expect = 1e-15
Identities = 156/224 (70%), Gaps = 0/224 (0%)
Strand=Plus/Minus
Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285
||||||||||| ||| ||||| || ||||| | |||||||| | ||||| || |
Sbjct 890558 CCTCATCTCTAGAAATGAGTTCATTACTGAATGTAAGGCCTGGCATAAGTCCTCTCTTCT 890499
Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345
|||||||||| || ||||| || || |||||| || || || ||||||||||| |
Sbjct 890498 TTAACCAAAAAATGGCAGCAAAACTACCACTAAAGAAAATACCTTCCACTGCAGCAAATG 890439
Query 14346 CTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAG 14405
| |||| ||||| ||| | || ||| | |||||| ||| ||||| | ||
Sbjct 890438 CAATTACACGTTCGGGAAAGGTAGCAGTTTCATGATTTATCCAATTTAATGCCCAATTAG 890379
Query 14406 AtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAA 14449
|||| | || | | || ||||||| ||||||||||||
Sbjct 890378 CTTTTCTCGCAACACACGGCAAATTTTCAATCGCATTAAATAAA 890335
Score = 93.3 bits (102), Expect = 4e-14
Identities = 149/214 (70%), Gaps = 0/214 (0%)
Strand=Plus/Minus
Query 14015 CAACCTAGTTCTAATAGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCA 14074
||||||| ||||| || ||||| ||||||| || ||||||||||| |||| | | |
Sbjct 890872 CAACCTAATTCTACAAGCAATCTGTCCGCAACAAATTCAATATATTGGCACATGAGTTTA 890813
Query 14075 CAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGAC 14134
|| ||||| ||||| | || || || | | ||||||||||||| ||| ||
Sbjct 890812 CAGTTCATGCCTATCATTTCAACGGGTAAAGCGTCAGTTAAAAATTCTTGTTCAATTTGG 890753
Query 14135 ACAGCCTCGTTTATAATAATCGTAATAATTTCATTAGAAGGAGGATATTTTAGATGTTTA 14194
|| || || || ||||| || | |||||| ||||| | | | | ||||||
Sbjct 890752 ACCGCGTCTTTAATAATTGATGTGACGCGTTCATTCGAAGGTTTCTGTATGATGTGTTTA 890693
Query 14195 AAAATTAAACACGCAAAATCACAATGAAGGCCCT 14228
|| ||||| || |||||||| ||||| | ||||
Sbjct 890692 AACATTAAGCATGCAAAATCGCAATGCAATCCCT 890659
Score = 91.5 bits (100), Expect = 1e-13
Identities = 82/103 (80%), Gaps = 0/103 (0%)
Strand=Plus/Minus
Query 13891 TTTGTTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGT 13950
|||||| | || || ||| |||||||||||| | |||| |||| || || ||||| ||
Sbjct 891068 TTTGTTTGCCATCACTCCCCATTTTTGATATTCTCCAACTTTTTTCTCGAAAAAGTTCGT 891009
Query 13951 TTTACCTTCCAGTGATATATTTTCCATAAAATCAAATGGATTT 13993
|||||||||| || |||| |||||| ||||| |||||||||
Sbjct 891008 CTTACCTTCCAAAGAAATATGTTCCATGAAATCGAATGGATTT 890966
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 482179395764880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |