Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Habropoda_20laboriosa_20[refseq_20GCF_5F001263275.1_202015-08-13] 27,566 sequences; 296,954,667 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq59 145 1e-29 seq284 100 4e-16 >seq59 Length=4191719 Score = 145 bits (160), Expect = 1e-29 Identities = 206/288 (72%), Gaps = 4/288 (1%) Strand=Plus/Minus Query 62294 CTGAATGGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCT 62353 |||||| || || || | | ||||| ||| || || || | || ||| | | ||| Sbjct 764808 CTGAATAGAACCGTTATTTGCTATAATTTCATTTTTCATGTCCTGATCCCAAAGATCTCT 764749 Query 62354 CTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCCAGACAATACTCT 62413 || || | | | | | | ||| || ||||| ||||| || ||||||||||| ||||| Sbjct 764748 TTCAGTAAGATCCCGTAACAAATGAGGATTAACAACTTGAAACTCTCCAGACAAAACTCT 764689 Query 62414 CCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGC 62473 | || ||||||||| | ||||| ||||| | |||||||||||||| |||||||| || Sbjct 764688 TCTTGTATAAATATTATTAGTATAGGGTTCTATGGACTCATTATTTCCTAAAATTTGCGC 764629 Query 62474 AGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTG-- 62531 ||| ||||| || ||||||||||| | || ||| |||||||| || ||||| | Sbjct 764628 AGTAGATGCTGTTGGCATAGGTGCAATTAACAAAGAATTTCTAACTCC--ATGTTTAGCA 764571 Query 62532 ATTTTATCTTTTAGATGTTCCCAATTCCAAAGATCCGACGGTACAACA 62579 ||||| || |||| | |||||| ||| | ||| | ||| |||| Sbjct 764570 ATTTTTTCCTTTAAAGCAGCCCAATCCCATAAATCAGTTGGTGTAACA 764523 Score = 107 bits (118), Expect = 2e-18 Identities = 185/267 (69%), Gaps = 4/267 (1%) Strand=Plus/Minus Query 63642 CTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 63701 ||||||||||| || | |||| | ||| ||| | || || ||||| || ||||| Sbjct 762895 CTAGACATTTGCTGTTGCTTAGTACATGCAGCAAAAAGAGTTGGTGAAGCATGTGTAAAA 762836 Query 63702 CATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATT 63761 | ||| || | | ||| || || || |||||| ||| ||||| ||| || Sbjct 762835 TAACGTTCTGATAAGAAATTATATGTTTCTATAGCTCTGTCAATATCATCACCATGGATA 762776 Query 63762 CCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTC 63821 | ||||| || | ||||||||||||||| || || ||||||| ||| | ||| || Sbjct 762775 GCAACTGCAACTCTCATTAACATGTGCTGTGGCCTCTCAACAACTTTTCCATATATCTTT 762716 Query 63822 AACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTT 63879 || || ||| | |||| | ||||| ||||||||||| ||||| ||||| |||| | Sbjct 762715 AATAAATAGCTTCTTTCAAGTGTTTTGAAACCAAAATAATTGTAACTGAAA--TCTCTAT 762658 Query 63880 CGTAAATAATAACCGAATTGAGCTTAT 63906 | ||||| || | ||||| | | ||| Sbjct 762657 CATAAATTATTGCAGAATTTAACCTAT 762631 Score = 100 bits (110), Expect = 4e-16 Identities = 198/289 (69%), Gaps = 18/289 (6%) Strand=Plus/Minus Query 62823 GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTC---TGACAATT 62879 |||||||||| ||||||||||| | ||| |||||||||| | ||| |||||||| Sbjct 764153 GCTTCTGGAACTGGATAATAATTGACATCAATAATTTTATCCAAATTATAGGTGACAATT 764094 Query 62880 ACTTTGACCACATCCTTC--AGTTTGAGAAAATCAAATCGCCCATCTA-------TTACA 62930 || ||| | ||| ||||| ||||||||| || || ||||| Sbjct 764093 ---TTCGTCACCT--TTCGAAGTTTTTCAAAATCAAAAGTTTTAT-TAGCAGGATTTACA 764040 Query 62931 AACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATAT 62990 ||||| |||| |||| || |||| ||| || || || | |||| | | | || Sbjct 764039 AACATATTCACAGCAATTGAAGCCAAATTGCATACAGCAATTTCATCTGGACTGGAGTAC 763980 Query 62991 TGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTC 63050 |||| || || ||||| | ||| ||||||||||| ||||||| |||||| ||||| Sbjct 763979 TGTACAATTTCTGTGCATAAATTGCTACACTTGATTGTTCCTATATTTTGATGATTTGAT 763920 Query 63051 TTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAA 63099 || || || ||| |||||||| ||| | ||||| || ||||||| Sbjct 763919 TTACGATTGCAGTGATCTTTATAAAGCATGTAAGGAGTTCCTGTTTCAA 763871 Score = 96.9 bits (106), Expect = 4e-15 Identities = 119/159 (75%), Gaps = 3/159 (2%) Strand=Plus/Minus Query 63188 TTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGA 63247 ||| || || || |||||||||| || || | |||| |||| | || ||||| || | Sbjct 763504 TTCAAATTCATCACCCCAAACATCATCTAAACCAGGAGATTCGTGTGGGCACATTAAAGT 763445 Query 63248 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-A 63306 ||| || | ||| |||||||||||||| |||||||||||||| | ||| ||| | Sbjct 763444 CCAAATACCATTTTCCAAAACTCGTTTCATAAAAAGATCAGGAATCCATAAAGC-ATAGA 763386 Query 63307 ATAGATCTCTTGTTCTATGTTCCTCGTTTCCTG-TATTC 63344 ||| ||||||| ||||| ||| || || |||| ||||| Sbjct 763385 ATAATTCTCTTGCTCTATTTTCTTCTTTACCTGTTATTC 763347 >seq284 Length=1419496 Score = 100 bits (110), Expect = 4e-16 Identities = 87/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 34068 TTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 34127 ||||| | || ||||| |||||||||||||| || || ||||| ||||| ||||| | | Sbjct 889928 TTAGAAAGGTCTACTTCCTCCACTGTCCAAAAGGAGGCTTCTGCTTTTTTGTACATTTGC 889869 Query 34128 CAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTT 34175 || |||||| | ||||||| || |||| |||||||||| ||||||| Sbjct 889868 CAAATGTCAGGCCATTGGATAGGAAAAACAACAAATCTACGTGGATTT 889821 Score = 96.9 bits (106), Expect = 4e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 33396 CCCAATTCAGAAATCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAA 33455 || ||||| || |||||| || || || ||||| |||||| ||| | || ||| Sbjct 890869 CCTAATTCTACAAGCAATCTGTCCGCAACAAATTCAATATATTGGCACATGAGTTTACAG 890810 Query 33456 TTCATTCCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACC 33515 ||||| ||||| | || ||| || | ||| |||| | ||||||||||||||| ||| Sbjct 890809 TTCATGCCTATCATTTCAACGGGTAAAGCGTCAGTTAAAAATTCTTGTTCAATTTGGACC 890750 Query 33516 GCATTTGTTATAATAAATCTAACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAAAC 33575 || | | | ||||| || | ||| ||| | ||| |||| | ||||||||| Sbjct 890749 GCGTCTTTAATAATTGATGTGACGCGTTCATTCGAAGGTTTCTGTATGATGTGTTTAAAC 890690 Query 33576 ATCAAACATGCGAAATCGCAGTGCAGACCCT 33606 || || ||||| |||||||| |||| |||| Sbjct 890689 ATTAAGCATGCAAAATCGCAATGCAATCCCT 890659 Score = 86.0 bits (94), Expect = 8e-12 Identities = 103/138 (75%), Gaps = 3/138 (2%) Strand=Plus/Minus Query 33236 TTAAAAGTCAACATCTAAAGAAAAATGATTGTCT-TCTTGA--GACATAACTCCCATTTT 33292 |||||||||| ||| | | ||||| | ||| | ||| | ||| |||||| ||| Sbjct 891104 TTAAAAGTCAGCATTAACTGTAAAATTGCTCTCTATTTTGTTTGCCATCACTCCCCATTT 891045 Query 33293 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTC 33352 ||| ||||| || || ||| |||||||| || || || |||||||| || |||| ||| Sbjct 891044 TTGATATTCTCCAACTTTTTTCTCGAAAAAGTTCGTCTTACCTTCCAAAGAAATATGTTC 890985 Query 33353 CATGAAATCAAACGGATT 33370 ||||||||| || ||||| Sbjct 890984 CATGAAATCGAATGGATT 890967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629600580600480