Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Habropoda_20laboriosa_20[refseq_20GCF_5F001263275.1_202015-08-13] 27,566 sequences; 296,954,667 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq59 194 2e-44 seq284 131 2e-25 >seq59 Length=4191719 Score = 194 bits (214), Expect = 2e-44 Identities = 231/310 (75%), Gaps = 4/310 (1%) Strand=Plus/Minus Query 37045 TGAATAGAACCATTATGTAACACAATTGTATTCTTTATGTCATTATTCCACATATTTCTA 37104 ||||||||||| |||| | | |||| ||| || ||||| | || ||| | || ||| Sbjct 764807 TGAATAGAACCGTTATTTGCTATAATTTCATTTTTCATGTCCTGATCCCAAAGATCTCTT 764748 Query 37105 CTTATTAGTTCTCTCAATAGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTT 37164 | || || | || | || ||||| ||||| ||||| |||||||| || |||||| Sbjct 764747 TCAGTAAGATCCCGTAACAAATGAGGATTAACAACTTGAAACTCTCCAGACAAAACTCTT 764688 Query 37165 CTTGTATATATATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGAT 37224 |||||||| ||||| ||||||| ||||| |||||||||||||| | ||| ||||| | Sbjct 764687 CTTGTATAAATATTATTAGTATAGGGTTCTATGGACTCATTATTTCCTAAAATTTGCGCA 764628 Query 37225 GTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAATT 37284 |||||||| || ||||| ||||| |||| | |||||| | ||||||| || |||| Sbjct 764627 GTAGATGCTGTTGGCATAGGTGCAATTAACAAAGAATTTCTAACTCCATGTTTAGCAATT 764568 Query 37285 CTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTGG-GT-TCTTTAACCACATATCAT 37342 | | |||| || ||||||||||||||| ||||| || | || ||||||||| | Sbjct 764567 TTTTCCTTTAAAGCAGCCCAATCCCATAAATCAGTTGGTGTAACATT--CCACATATCGT 764510 Query 37343 ATTGTAGAAT 37352 |||||| ||| Sbjct 764509 ATTGTAAAAT 764500 Score = 140 bits (154), Expect = 3e-28 Identities = 214/301 (71%), Gaps = 3/301 (1%) Strand=Plus/Minus Query 38095 TTTCTTAAGCTTAGAAAAT-CGAATATATCAGCGTGCCATGGTTCTATATAAATCGACAT 38153 ||| ||||| | ||||| | || || || || ||||||||||||| ||| | | | Sbjct 763277 TTTTTTAAGGTCCAAAAATTCAAAAATGTCTGCATGCCATGGTTCTAAATATAGGGCAAA 763218 Query 38154 TGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCT 38213 ||||||||||||||||| ||||| |||| || ||||| | | || |||||||||| ||| Sbjct 763217 TGCTCCTGGTCTTTTATTCCCTCCTTGATCAACATATCGAGCAGTATTATTATATACTCT 763158 Query 38214 TAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGC 38273 | ||| || |||| |||||||||| || | |||| ||| ||||| || || Sbjct 763157 AATCATTGGAACTAAACCATTAGATACACCAAATGTACCACCTATTGGTGTACCTTTTGC 763098 Query 38274 TCGTATATTACTTATCGACAATCCTATTCCACCTGCATGTTTTGAT-ATTAAAGCGCATT 38332 ||| ||| | ||| | ||| || ||||| ||| | |||| | |||| || ||| Sbjct 763097 TCGAATACAATGTATGTTAAGTCCAATACCACCAGCA-GATTTGCTAATTAGTGCACATC 763039 Query 38333 GTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAAC 38392 ||||| |||||| | || ||||| || || || | |||| ||||| |||||||| Sbjct 763038 TCTTTAATGTATCATAAATTCCTTCAATGCTATCTGAACTCATTGTTAGTAGAAAACAAC 762979 Query 38393 T 38393 | Sbjct 762978 T 762978 Score = 100 bits (110), Expect = 3e-16 Identities = 127/174 (73%), Gaps = 8/174 (5%) Strand=Plus/Minus Query 36864 CCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTATCTATATATATTGT 36923 |||||||||||||||||| || |||||| | ||| || ||| | |||| | Sbjct 765083 CCATCCGTAAAAATGCATTGAAGTTAGTTTTTCTGTTGTTGGTTTAGCCATATGAA---- 765028 Query 36924 CATTGATTGACT----TTGATCTATAAACGCACCTCTGTCGGCTGCCATTTCTAAAATAC 36979 |||| | ||||| |||||||||||| ||||| | ||||||||||| | ||| || Sbjct 765027 CATTTAATGACTGCGATTGATCTATAAAGGCACCACGATCGGCTGCCATCTTTAAGATTA 764968 Query 36980 ATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCTGGTA 37033 |||||| ||||| |||||||| |||||||| | ||||| || || |||| Sbjct 764967 TTTTTTGTGATATTTCCCAAACTGTTTTATAAAGCATTTTTAAATCATTCGGTA 764914 Score = 86.0 bits (94), Expect = 6e-12 Identities = 209/317 (66%), Gaps = 6/317 (2%) Strand=Plus/Minus Query 37582 ACTGGATAATAATTGATATCTATTATTTTATTTAGATTTTTAACTAGTATTTTCGTAATT 37641 |||||||||||||||| ||| || ||||||| | ||| | | |||||||| | Sbjct 764144 ACTGGATAATAATTGACATCAATAATTTTATCCAAATTATAGGTGACAATTTTCGTCACC 764085 Query 37642 ATTCTCAACTTGTCGAACATAAATACGTTATT------ATTAACAAATTTACTCAACGAA 37695 ||| | || || || ||| ||||| ||| ||||| || ||| | | Sbjct 764084 TTTCGAAGTTTTTCAAAATCAAAAGTTTTATTAGCAGGATTTACAAACATATTCACAGCA 764025 Query 37696 ATAGATCCTAGATTACATACAGCAACTTCATCTTCGTTACTAAATTGTATAATCTCTGTA 37755 || || | | ||| |||||||||| ||||||| | | |||| ||| ||||| Sbjct 764024 ATTGAAGCCAAATTGCATACAGCAATTTCATCTGGACTGGAGTACTGTACAATTTCTGTG 763965 Query 37756 CAGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTGATTGGATTTTTTATTACAAGAA 37815 || | ||| || | | |||||||| | ||| ||||| ||||| ||| || | Sbjct 763964 CATAAATTGCTACACTTGATTGTTCCTATATTTTGATGATTTGATTTACGATTGCAGTGA 763905 Query 37816 TCTTTATATAGTATATACGGCGTTCCTTGTTCTATTTGAGCCTCGATAATAGATTTCCAT 37875 |||||||| || || || || |||||| ||| | ||| ||| | ||||| | |||| Sbjct 763904 TCTTTATAAAGCATGTAAGGAGTTCCTGTTTCAACTTGGGCCATAAGAATAGCTGTCCAC 763845 Query 37876 AAACTTCTTGCTTTAAC 37892 || ||| |||| ||| Sbjct 763844 AAGTCTCTGGCTTGAAC 763828 >seq284 Length=1419496 Score = 131 bits (144), Expect = 2e-25 Identities = 170/235 (72%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 11880 TTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATAT 11939 ||||| || |||| | ||||||||| ||||| ||| ||||||||||| || | || Sbjct 890252 TTTCTTTAGCATCTGCAATATATGTATCGATTAACAAAGAGTACATTTCTGAGTGCACAT 890193 Query 11940 TTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCCACAT 11999 ||||||| || | |||||| ||||| || || |||||||||| || || ||| Sbjct 890192 TTTCCATTGCAACTTGAAAGCCATAAAAGCAACGTGCCTCTGTTATTTGCACCTCCTGGC 890133 Query 12000 AAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTA 12059 ||||| ||| | | ||| ||||| ||||| |||||| || ||||||||||||| || Sbjct 890132 TAAATCGTTCAACAAGATTTTCATTGACAATTCCATCAGAAGCAGCAAAAAATGCTAATA 890073 Query 12060 TATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATCCCAATCATCTAAATC 12114 |||| |||||| | ||| || ||||||| | | ||| ||| |||||| Sbjct 890072 CATGTGATATAAATTTTTTCTCACTGATAGTTAAACTGTTCCAGTCAAATAAATC 890018 Score = 87.8 bits (96), Expect = 2e-12 Identities = 152/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 11432 ACTTTTTCACAACCTAACTCTGTTAATAATCTATCTGCGACGAATTCTATATACTGAGAC 11491 || |||| |||||||| ||| | ||||| || || || ||||| ||||| || || Sbjct 890881 ACCTTTTGGCAACCTAATTCTACAAGCAATCTGTCCGCAACAAATTCAATATATTGGCAC 890822 Query 11492 ATTAAACAACAATTCATACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACTCCTTT 11551 || | ||| ||||| ||||| | || || || | ||| | || ||||| || | | Sbjct 890821 ATGAGTTTACAGTTCATGCCTATCATTTCAACGGGTAAAGCGTCAGTTAAAAATTCTTGT 890762 Query 11552 TCTATATTAACCGCATCAATGATTATCGACGTTATAACTTCCTTAGATGGTGGATGTAAT 11611 || || | ||||| || | || || || || | ||| || || ||| |||| Sbjct 890761 TCAATTTGGACCGCGTCTTTAATAATTGATGTGACGCGTTCATTCGAAGGTTTCTGTATG 890702 Query 11612 AAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACC 11652 | |||||||||||||| || |||||||| ||||| || || Sbjct 890701 ATGTGTTTAAACATTAAGCATGCAAAATCGCAATGCAATCC 890661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468363358067040