Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Habropoda_20laboriosa_20[refseq_20GCF_5F001263275.1_202015-08-13] 27,566 sequences; 296,954,667 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq59 187 4e-42 seq284 111 2e-19 >seq59 Length=4191719 Score = 187 bits (206), Expect = 4e-42 Identities = 229/311 (74%), Gaps = 4/311 (1%) Strand=Plus/Minus Query 78966 CTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATTCCATAATTTTCT 79025 |||||| || || || ||| ||||| ||| || || || | || ||| | | ||| Sbjct 764808 CTGAATAGAACCGTTATTTGCTATAATTTCATTTTTCATGTCCTGATCCCAAAGATCTCT 764749 Query 79026 CTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCT 79085 || || | | | | | | ||| |||||||| |||||||| ||||||||||| ||||| Sbjct 764748 TTCAGTAAGATCCCGTAACAAATGAGGATTAACAACTTGAAACTCTCCAGACAAAACTCT 764689 Query 79086 CCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGC 79145 | || ||||||||| | ||||| ||||| | || ||||||||||| |||||||| || Sbjct 764688 TCTTGTATAAATATTATTAGTATAGGGTTCTATGGACTCATTATTTCCTAAAATTTGCGC 764629 Query 79146 AGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGATCTG-- 79203 ||| ||||| |||||||||||||| | || ||| |||||||| || ||| | | Sbjct 764628 AGTAGATGCTGTTGGCATAGGTGCAATTAACAAAGAATTTCTAACTCC--ATGTTTAGCA 764571 Query 79204 ATTTTATCTTTTAGAGATTCCCAATCCCAAAGATCAGACGGGACAACATTCCAAAGATCA 79263 ||||| || |||| || |||||||||| | ||||| || ||||||||| | ||| Sbjct 764570 ATTTTTTCCTTTAAAGCAGCCCAATCCCATAAATCAGTTGGTGTAACATTCCACATATCG 764511 Query 79264 TATTGTAGAAT 79274 ||||||| ||| Sbjct 764510 TATTGTAAAAT 764500 Score = 109 bits (120), Expect = 8e-19 Identities = 122/159 (77%), Gaps = 3/159 (2%) Strand=Plus/Minus Query 79860 TTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGA 79919 ||| || || || ||||||||||| ||||| |||||| |||||| || ||||| || | Sbjct 763504 TTCAAATTCATCACCCCAAACATCATCTAAACCAGGAGATTCGTGTGGGCACATTAAAGT 763445 Query 79920 CCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-A 79978 ||| |||| ||| |||||||||||||| |||||||||||||| | ||| ||| | Sbjct 763444 CCAAATACCATTTTCCAAAACTCGTTTCATAAAAAGATCAGGAATCCATAAAGC-ATAGA 763386 Query 79979 ATAGATCTCTGGTTCTATGCTCCTCGTTTCCTG-TATTC 80016 ||| ||||| | ||||| || || || |||| ||||| Sbjct 763385 ATAATTCTCTTGCTCTATTTTCTTCTTTACCTGTTATTC 763347 Score = 86.0 bits (94), Expect = 9e-12 Identities = 109/149 (73%), Gaps = 2/149 (1%) Strand=Plus/Minus Query 80678 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAA 80737 ||||||| ||| || ||||| ||||| ||||| || | || ||||| || ||||| | Sbjct 762440 CACTAAAGGTTTTCTTCGTTTCTTTGTGAAGATTGGAGATTGCAATTCTTGCTGCTAATA 762381 Query 80738 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 80797 |||||||||||||||| ||||| | | ||||| |||| ||||| ||| | || | Sbjct 762380 CAGCATAATCTGGATGTTTGGTAGTCATACTTGCTGCAGTTTCAGCTGCAAGATTATCTA 762321 Query 80798 ATTCTACCGTTGTTACTCC--ATTATATA 80824 | || || || || || || | |||||| Sbjct 762320 ACTCAACTGTGGTAACACCTGAGTATATA 762292 Score = 86.0 bits (94), Expect = 9e-12 Identities = 170/250 (68%), Gaps = 4/250 (2%) Strand=Plus/Minus Query 80314 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 80373 ||||||||||| || | |||| | ||| ||| | || || ||||| || ||||| Sbjct 762895 CTAGACATTTGCTGTTGCTTAGTACATGCAGCAAAAAGAGTTGGTGAAGCATGTGTAAAA 762836 Query 80374 CATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATT 80433 | ||| || | | ||| || || || |||||| || ||||| ||| || Sbjct 762835 TAACGTTCTGATAAGAAATTATATGTTTCTATAGCTCTGTCAATATCATCACCATGGATA 762776 Query 80434 CCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTC 80493 | || || || | ||||||||||||||| || || ||||| | || || ||| || Sbjct 762775 GCAACTGCAACTCTCATTAACATGTGCTGTGGCCTCTCAACAACTTTTCCATATATCTTT 762716 Query 80494 AACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTT 80551 || || || | |||| | ||||| ||||||||||| ||||| ||||| |||| | Sbjct 762715 AATAAATAGCTTCTTTCAAGTGTTTTGAAACCAAAATAATTGTAACTGAAA--TCTCTAT 762658 Query 80552 CGTAAATAAT 80561 | ||||| || Sbjct 762657 CATAAATTAT 762648 >seq284 Length=1419496 Score = 111 bits (122), Expect = 2e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 49756 TTATAAAtttttttAAATCCCAATTCAGAAATCAATCTATCCGCGACAAATTCTATATAT 49815 ||| ||| |||| | || ||||| || |||||| ||||| |||||||| |||||| Sbjct 890887 TTACAAACCTTTTGGCAACCTAATTCTACAAGCAATCTGTCCGCAACAAATTCAATATAT 890828 Query 49816 GTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAAT 49875 ||| | || ||| ||||| ||||| | || ||| || | ||| |||| | |||| Sbjct 890827 TGGCACATGAGTTTACAGTTCATGCCTATCATTTCAACGGGTAAAGCGTCAGTTAAAAAT 890768 Query 49876 TCTTGTTCAATGGATACCGCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGA 49935 ||||||||||| ||||| ||| | ||||| ||| | ||| ||| | ||| Sbjct 890767 TCTTGTTCAATTTGGACCGCGTCTTTAATAATTGATGTGACGCGTTCATTCGAAGGTTTC 890708 Query 49936 TGCAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCT 49984 || | | ||||||||||| || ||||| |||||||| |||| |||| Sbjct 890707 TGTATGATGTGTTTAAACATTAAGCATGCAAAATCGCAATGCAATCCCT 890659 Score = 105 bits (116), Expect = 1e-17 Identities = 88/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 50446 TTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 50505 ||||| | |||||||| |||||||||||||| || || ||||| ||||| ||||| | | Sbjct 889928 TTAGAAAGGTCTACTTCCTCCACTGTCCAAAAGGAGGCTTCTGCTTTTTTGTACATTTGC 889869 Query 50506 CAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTT 50553 || |||||| | ||||||| || |||| |||||||||| ||||||| Sbjct 889868 CAAATGTCAGGCCATTGGATAGGAAAAACAACAAATCTACGTGGATTT 889821 Score = 86.0 bits (94), Expect = 9e-12 Identities = 103/138 (75%), Gaps = 3/138 (2%) Strand=Plus/Minus Query 49614 TTAAAAGTCAACATCTAGAGAAAAATGATTATCT-TCTTGA--GACATAACTCCCATTTT 49670 |||||||||| ||| | | ||||| | ||| | ||| | ||| |||||| ||| Sbjct 891104 TTAAAAGTCAGCATTAACTGTAAAATTGCTCTCTATTTTGTTTGCCATCACTCCCCATTT 891045 Query 49671 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTC 49730 ||| ||||| || || ||| |||||||| || || || |||||||| || |||| ||| Sbjct 891044 TTGATATTCTCCAACTTTTTTCTCGAAAAAGTTCGTCTTACCTTCCAAAGAAATATGTTC 890985 Query 49731 CATGAAATCAAACGGATT 49748 ||||||||| || ||||| Sbjct 890984 CATGAAATCGAATGGATT 890967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718021302528240